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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G254860
Reference: TK1151 Chr: Chr07 Coordinates: 63575407-63581822 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3658 bp · TkA07G254860|TK1151|cDNA

AAAGCGGGAAAGAAGCCAATTACATGTTGAACCGGCGGGAATTTTCCCACACTCGAAATAAGCAGAATTTGCCCTATAAATATATCAATATACCAGAAATGCCCATGTTTTGTGTTTTCTCTCTCCTCGCAACTCATTAAGTCGGCCATTTGCCCCTTTTCTTTCTACCTCCCACCAGATTTAGGAGACTGACAAGGAAAACCCTCGAAGATCTCCATGGCAAGACGCTCCAAATCGAAAGACTCCACGGAAGAATCTCT...

CDS

Download CDS FASTA

3198 bp · TkA07G254860|TK1151|CDS

ATGGCAAGACGCTCCAAATCGAAAGACTCCACGGAAGAATCTCTATCTAATTCGTCAGAGGAGGAACAGGTCAATGATCAGGAAGAAGAAGACGAGGAAGAGCTGGAAGCCGTTGCACGGCCTGTTGATTCTGATGAAGATGAAAACGCTACCGCCGCGGTTGATGCCACTGGTGAGGAGCAGGACGAAGATGACGAATCCGAGGATGGCAATGAGGAGGCCAACACTGAAATTAGTCATCGTGAGAAGGCCAGGTTAAA...

Protein

Download Protein FASTA

1065 aa · TkA07G254860|TK1151|PROTEIN

MARRSKSKDSTEESLSNSSEEEQVNDQEEEDEEELEAVARPVDSDEDENATAAVDATGEEQDEDDESEDGNEEANTEISHREKARLKEMQRLKRQKIQDILDQQNASVEADMNNKGKGRLKFLLQQTELFAHFAKSGASASQKKGKERGRHASKLTEEEEDEEYLKEEEAGAGHTRLLVQPSCITGKMRDYQLAGLNWMIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIKRFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G254860
TK1151 IDTkA07G254860
OH-1004 IDLXL04_028958
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 93.615 / OH-1004 92.229
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G254860
LocationChr07:63575407-63581822 (+)
DescriptionSimilar to CHR17: ISWI chromatin-remodeling complex ATPase CHR17
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g18620 Possesses intrinsic ATP-dependent nucleosome-remodeling activity.
Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.05074.x
ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis.2014 · DOI: 10.1111/tpj.12499
At3g06400 Possesses intrinsic ATP-dependent nucleosome-remodeling activity.
CHR11, a chromatin-remodeling factor essential for nuclear proliferation during female gametogenesis in Arabidopsis thaliana.2005 · DOI: 10.1073/pnas.0508186102
Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.05074.x
ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis.2014 · DOI: 10.1111/tpj.12499

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0367900 Possesses intrinsic ATP-dependent nucleosome-remodeling activity. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028958 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000183 rDNA heterochromatin formation Biological Process
GO:0006275 regulation of DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006334 nucleosome assembly Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006352 DNA-templated transcription initiation Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006974 DNA damage response Biological Process
GO:0009553 embryo sac development Biological Process
KEGG gene cross-reference
ath:AT3G06400
ath:AT5G18620
dosa:Os01g0367900
mmu:93761
mmu:93762
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957
Rank 1 · TkA07G254860 · TK1151
Cytoplasm0.118
Rank 2 · TkA07G254860 · TK1151
Cell membrane0.018
Rank 3 · TkA07G254860 · TK1151
Mitochondrion0.016
Rank 4 · TkA07G254860 · TK1151
Endoplasmic reticulum0.008
Rank 5 · TkA07G254860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13892DBINO17-36 aa
PF13892DBINO84-135 aa
PF09111SLIDE87-113 aa
PF09110HAND136-162 aa
PF13892DBINO143-163 aa
PF04851ResIII187-347 aa
PF00176SNF2-rel_dom191-468 aa
PF00270DEAD208-348 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G254860PF13892DBINO17361.7e-0525.9
TkA07G254860PF13892DBINO841351.7e-0525.9
TkA07G254860PF09111SLIDE871136.2e-43146.2
TkA07G254860PF09110HAND1361624.7e-0731.3
TkA07G254860PF13892DBINO1431631.7e-0525.9
TkA07G254860PF04851ResIII1873477.2e-1039.7
TkA07G254860PF00176SNF2-rel_dom1914681.8e-101339.8
TkA07G254860PF00270DEAD2083481.4e-0525.6
TkA07G254860PF13173AAA_143093490.0713.9
TkA07G254860PF11496HDA2-34806210.0001421.9
TkA07G254860PF00271Helicase_C4906036.8e-2588.2
TkA07G254860PF00270DEAD6016471.4e-0525.6
TkA07G254860PF13892DBINO6396781.7e-0525.9
TkA07G254860PF13892DBINO6687071.7e-0525.9
TkA07G254860PF09111SLIDE6827086.2e-43146.2
TkA07G254860PF09110HAND7528394.7e-0731.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JY24Arabidopsis thalianasp|F4JY24|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR1789.300%Swiss-ProtHigh
Q8RWY3Arabidopsis thalianasp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR1188.400%Swiss-ProtHigh
Q7G8Y3Oryza sativa subsp. japonicasp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain87.000%Swiss-ProtHigh

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