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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G252610
Reference: TK1151 Chr: Chr07 Coordinates: 63016849-63024015 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1199 bp · TkA07G252610|TK1151|cDNA

GTCTCTCCCTGCTTTTGAGCTTCTATATCTCATTTCCACGTACGACAAAGTTTGCAACGCGTAAAGAAATCTCTTGCTACCGATGCGTTTTTCGCTCACTATCTCGTTGAAGCAGGGTTTTGAAATCTCTTGTCACCGGCGACGATCTCCCGATAGAGAGGGAGAAAGGACGTGCGTCCAATTGCTTGGTATGCGCTGAGAACCAGAACCCTAAGTCCAAAAATTAGGCATCTGTCTGTTCTATTTTAGGAGTGGAAATC...

CDS

Download CDS FASTA

612 bp · TkA07G252610|TK1151|CDS

ATGGAATCGAGTGATTGGAGGGCTCAGCTGCAAGCAGATTCACGGAAAAAGATGGTGAACAGGATAATGGATGCCATGAAGAGTCGAGTTCAGGTTTCTGGAAATGAGGGGTTACAAGAACTTGAGAAAATCGCTGTGATCTTTGAAGAGAAGGTTTATATTGCTGCATCAAGCCAGTCTGATTATACACGGAAGATATGCTTCAAGATAGTGACTATTGAAACCAGATCACAAAATCCATTAGCAGACACTAATAGTGT...

Protein

Download Protein FASTA

203 aa · TkA07G252610|TK1151|PROTEIN

MESSDWRAQLQADSRKKMVNRIMDAMKSRVQVSGNEGLQELEKIAVIFEEKVYIAASSQSDYTRKICFKIVTIETRSQNPLADTNSVINPSYPDSTTGEEWQEEVYEKIKALKDLYLLDLNDMHQKIVRKLQQHGALPQQLPNERIEKLKIFKNVLERFMAFLQIPKHNISPIFKEKLSTYEKQIVFIATSNRHQPPPQQTHS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G252610
TK1151 IDTkA07G252610
OH-1004 IDLXL04_028938
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)64.800
Protein coverage (%)TK1151 60.591 / OH-1004 10.073
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G252610
LocationChr07:63016849-63024015 (+)
DescriptionSimilar to MED15A: Mediator of RNA polymerase II transcription subunit 15a
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g15780 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028938 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0045723 positive regulation of fatty acid biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016592 mediator complex Cellular Component
GO:0003713 transcription coactivator activity Molecular Function
GO:0031490 chromatin DNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G15770
ath:AT1G15780
ath:AT2G10440
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.770
Rank 1 · TkA07G252610 · TK1151
Cytoplasm0.327
Rank 2 · TkA07G252610 · TK1151
Cell membrane0.041
Rank 3 · TkA07G252610 · TK1151
Endoplasmic reticulum0.026
Rank 4 · TkA07G252610 · TK1151
Mitochondrion0.022
Rank 5 · TkA07G252610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09606Med15_N3-71 aa
PF16987KIX_24-81 aa
PF02172KIX4-74 aa
PF08822DUF18049-49 aa
PF04614Pex1911-40 aa
PF23161HTH_RNase_II11-46 aa
PF03592Terminase_216-148 aa
PF23161HTH_RNase_II98-129 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G252610PF09606Med15_N3710.01216.0
TkA07G252610PF16987KIX_24811.4e-2589.7
TkA07G252610PF02172KIX4740.1113.6
TkA07G252610PF08822DUF18049490.2911.7
TkA07G252610PF04614Pex1911400.1812.2
TkA07G252610PF23161HTH_RNase_II11460.3612.4
TkA07G252610PF03592Terminase_2161480.1213.6
TkA07G252610PF23161HTH_RNase_II981290.3612.4
TkA07G252610PF04358DsrC991460.1213.6
TkA07G252610PF02172KIX1041180.1113.6
TkA07G252610PF09606Med15_N1171170.01216.0
TkA07G252610PF02172KIX1231340.1113.6
TkA07G252610PF16987KIX_21251501.4e-2589.7
TkA07G252610PF04614Pex191271500.1812.2
TkA07G252610PF08822DUF18041431830.2911.7
TkA07G252610PF05272VapE-like_dom1511950.112.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I171Arabidopsis thalianasp|F4I171|MD15A_ARATH Mediator of RNA polymerase II transcription subunit 15a69.100%Swiss-ProtLow

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