TkA07G251360 | RubberDandelionOmics

Gene overview

TkA07G251360

Reference: TK1151 Chr: Chr07 Coordinates: 62698685-62700317 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1541 bp · TkA07G251360|TK1151|cDNA

CGAATCCAAATATTGGTCCTACCTCAATTATGCAAGAAACGGGCAAACGACCCCACCACGCATTTTGGCTAAGACTCTGGTACGTGTCAGTCCCTGATTGGTTCTATACTCCGTTTGGATAGCGTCGCAGGATTGCGGAGAGAGAATGTGTATTCACTCAAGACCCAAAACCCATAACCAATTAAACAAACGCCAACACCAGTCTCCATGGGCAAACCAAGCTGGAACATGGCCGTGACCCTTTGTTATTCCTGCAAAAC...

CDS

Download CDS FASTA

1122 bp · TkA07G251360|TK1151|CDS

ATGGGCAAACCAAGCTGGAACATGGCCGTGACCCTTTGTTATTCCTGCAAAACGAAGTCCGCCGCTTTGTTCTGTAAAGCAGACTCCGCCTTCCTCTGTATACCTTGCGACGGGAAGGTCCACGCCGCCAACAAACTCGCATCTCGCCACGCGCGTGTATGGATGTGTGAGGTGTGTGAGCAAGCTCCGGCGAGCGTCACCTGTAAGGCGGATGCTGCCACCCTCTGCGTTACCTGTGACCGCGATATCCATGCGGCCAA...

Protein

Download Protein FASTA

373 aa · TkA07G251360|TK1151|PROTEIN

MGKPSWNMAVTLCYSCKTKSAALFCKADSAFLCIPCDGKVHAANKLASRHARVWMCEVCEQAPASVTCKADAATLCVTCDRDIHAANPLSRRHERFPVVPFYDPASSVSKMGGGGDNDHSDQHYLLDFDVNVGGTEAEEAEAASWLLPNPNLNKIPDGSENDNLKVKESESEYLFNEIDPYLDIDLKTPDQKPHQILRRYNSPTDGVVPVQNNNHQYQMPTHAHASPEVVEGLPAYDVDYTGSKPFMYNFTSQSVSQSVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G251360`
TK1151 ID	TkA07G251360
OH-1004 ID	LXL04_028931
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G251360

Location Chr07:62698685-62700317 (-)

Description Similar to COL4: Zinc finger protein CONSTANS-LIKE 4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24930`	Zinc finger protein CONSTANS-LIKE 4.	No verified direct reference in this release
`At5g57660`	Zinc finger protein CONSTANS-LIKE 5.	No verified direct reference in this release
`At2g24790`	Zinc finger protein CONSTANS-LIKE 3.	No verified direct reference in this release
`At5g15850`	Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.	No verified direct reference in this release
`At3g02380`	Putative transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028931 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010099 regulation of photomorphogenesis Biological Process

GO:0010161 red light signaling pathway Biological Process

GO:0032922 circadian regulation of gene expression Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT2G24790

ath:AT3G02380

ath:AT5G15850

ath:AT5G24930

ath:AT5G57660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.829

Rank 1 · TkA07G251360 · TK1151

Cytoplasm0.227

Rank 2 · TkA07G251360 · TK1151

Cell membrane0.066

Rank 3 · TkA07G251360 · TK1151

Endoplasmic reticulum0.051

Rank 4 · TkA07G251360 · TK1151

Lysosome / Vacuole0.017

Rank 5 · TkA07G251360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00643zf-B_box11-49 aa

PF16366CEBP_ZZ11-50 aa

PF22586ANCHR-like_BBOX12-50 aa

PF23663Znf_SCAND312-19 aa

PF23663Znf_SCAND331-43 aa

PF00643zf-B_box53-97 aa

PF16366CEBP_ZZ55-93 aa

PF22586ANCHR-like_BBOX56-94 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G251360	`PF00643`	zf-B_box	11	49	9.4e-08	32.8
TkA07G251360	`PF16366`	CEBP_ZZ	11	50	0.5	11.3
TkA07G251360	`PF22586`	ANCHR-like_BBOX	12	50	0.00035	21.3
TkA07G251360	`PF23663`	Znf_SCAND3	12	19	5.4	7.8
TkA07G251360	`PF23663`	Znf_SCAND3	31	43	5.4	7.8
TkA07G251360	`PF00643`	zf-B_box	53	97	9.4e-08	32.8
TkA07G251360	`PF16366`	CEBP_ZZ	55	93	0.5	11.3
TkA07G251360	`PF22586`	ANCHR-like_BBOX	56	94	0.00035	21.3
TkA07G251360	`PF23663`	Znf_SCAND3	73	85	5.4	7.8
TkA07G251360	`PF16366`	CEBP_ZZ	177	183	0.5	11.3
TkA07G251360	`PF00643`	zf-B_box	286	289	9.4e-08	32.8
TkA07G251360	`PF06203`	CCT	307	349	1.4e-17	64.2
TkA07G251360	`PF09425`	Jas_motif	313	329	0.18	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940T9`	Arabidopsis thaliana	sp\|Q940T9\|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4	49.600%	Swiss-Prot	Medium
`Q9FHH8`	Arabidopsis thaliana	sp\|Q9FHH8\|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5	44.000%	Swiss-Prot	Medium
`Q9SK53`	Arabidopsis thaliana	sp\|Q9SK53\|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3	45.100%	Swiss-Prot	Medium
`O50055`	Arabidopsis thaliana	sp\|O50055\|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1	44.500%	Swiss-Prot	Medium
`Q96502`	Arabidopsis thaliana	sp\|Q96502\|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2	43.500%	Swiss-Prot	Medium

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