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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G250890
Reference: TK1151 Chr: Chr07 Coordinates: 62570095-62573596 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2030 bp · TkA07G250890|TK1151|cDNA

TCAAGATGGGTTCCCAACTAACCCCTTCTTCCCAAGATGCAGCGAGGTGTCTACCGAATTTTTCCTCTCAACTCTCCACCAACCCCTTCCCCATTTCCTCACCAACAACTCGTATAAAGGCTGCTTTCATTCTCTCTCCTCCATCTACCTTCCCATCTGCGCGCTACACCTAAGGCTGCAATGGAGCTCGTAACACCTGCTATCGAGAAGATGGGCGGAAGGGAAGGGATTAGGAGGAATTCGACCTTAATTTGTGCACC...

CDS

Download CDS FASTA

1587 bp · TkA07G250890|TK1151|CDS

ATGGAGCTCGTAACACCTGCTATCGAGAAGATGGGCGGAAGGGAAGGGATTAGGAGGAATTCGACCTTAATTTGTGCACCGATAATGGCGGATACGGTGGATCAGATGGTGATTCAAATGAATTCAGCGAAATCTTATGGTGCTGACCTTGTTGAAATCCGACTGGATAGCTTGAAGGAGTTTAGCGTTCCAGAGGATATCCAAACCCTAGTCAAACTTAGTCCTCTCCCGACGCTTTTCACTTACAGACCGACATGGGA...

Protein

Download Protein FASTA

528 aa · TkA07G250890|TK1151|PROTEIN

MELVTPAIEKMGGREGIRRNSTLICAPIMADTVDQMVIQMNSAKSYGADLVEIRLDSLKEFSVPEDIQTLVKLSPLPTLFTYRPTWEGGQYSGDEESRLDALRLAMELGADHIDVELQAVDDFNNLIKGDKPTKCKLIVSSHNYENTPSVEDLGNLVARIQSTGADIVKFATTAVDITDVARVFQITAHSQVPIIAMVMGEKGLMSRVLCPKFGGYLTFGTLEHGKVSAPGQPTIRDLLDLFNFRQLGPDTKVFGIIGKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G250890
TK1151 IDTkA07G250890
OH-1004 IDLXL04_028924
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 89.643
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G250890
LocationChr07:62570095-62573596 (+)
DescriptionSimilar to EMB3004: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g06350 Bifunctional dehydroquinate dehydratase-shikimate dehydrogenase enzyme that catalyzes two steps in the chorismate biosynthesis pathway. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028924 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008652 amino acid biosynthetic process Biological Process
GO:0009073 aromatic amino acid family biosynthetic process Biological Process
GO:0009423 chorismate biosynthetic process Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0019632 shikimate metabolic process Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003855 3-dehydroquinate dehydratase activity Molecular Function
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity Molecular Function
GO:0050661 NADP binding Molecular Function
KEGG gene cross-reference
ath:AT3G06350
bcb:BCB4264_A4454
bce:BC4331
bcu:BCAH820_4356
btk:BT9727_4070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.482
Rank 1 · TkA07G250890 · TK1151
Plastid0.241
Rank 2 · TkA07G250890 · TK1151
Nucleus0.216
Rank 3 · TkA07G250890 · TK1151
Cell membrane0.100
Rank 4 · TkA07G250890 · TK1151
Peroxisome0.064
Rank 5 · TkA07G250890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01487DHquinase_I24-246 aa
PF04551GcpE31-70 aa
PF03435Sacchrp_dh_NADP99-117 aa
PF04551GcpE137-198 aa
PF00106adh_short157-189 aa
PF03446NAD_binding_2166-203 aa
PF08501Shikimate_dh_N256-336 aa
PF01262AlaDh_PNT_C368-428 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G250890PF01487DHquinase_I242466.6e-74249.5
TkA07G250890PF04551GcpE31700.01415.8
TkA07G250890PF03435Sacchrp_dh_NADP991170.003918.2
TkA07G250890PF04551GcpE1371980.01415.8
TkA07G250890PF00106adh_short1571890.1612.2
TkA07G250890PF03446NAD_binding_21662030.2412.2
TkA07G250890PF08501Shikimate_dh_N2563361.1e-2693.6
TkA07G250890PF01262AlaDh_PNT_C3684280.002917.8
TkA07G250890PF028262-Hacid_dh_C3734170.2811.2
TkA07G250890PF01488Shikimate_DH3764472.8e-0834.7
TkA07G250890PF07991KARI_N3764310.1112.8
TkA07G250890PF03807F420_oxidored3824265.6e-0524.4
TkA07G250890PF03435Sacchrp_dh_NADP3824910.003918.2
TkA07G250890PF00890FAD_binding_23824110.006316.5
TkA07G250890PF00106adh_short3824230.1612.2
TkA07G250890PF03446NAD_binding_23834190.2412.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SQT8Arabidopsis thalianasp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic72.100%Swiss-ProtHigh

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