TkA07G248410 | RubberDandelionOmics

Gene overview

TkA07G248410

Reference: TK1151 Chr: Chr07 Coordinates: 61957037-61961404 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2046 bp · TkA07G248410|TK1151|cDNA

AAAGTCATCAATTGCGTATAGATGTTACTTGACATAATATTTTTGCTTACTGTACGTATCTCCTATTGTATTAATAAATATTTTCTATTGTTACACGTAGATCTTGAAGGACTTGCAGCCTAACATGTAATGATTTTCTTTGGTTAAATGTTAAATTTATCTTTAAAAGTTGAATATGTGTAAGTGAAGTTAGAATAATTGTTGCTGATAAAATAATGGCTATATTAAGTGGAAAACTATGCCCGGGCGTGGGGGGTGAA...

CDS

Download CDS FASTA

501 bp · TkA07G248410|TK1151|CDS

ATGGAGCCACTATGGTTAGAGTCGCCAAACACTAGTTCAATGATGAAGAACAATGGCAGACCTGATTCTTCAACATTAAAACAATATGGAATTGATATAAAGGGAGAGGCCAATTCATATTTTTTTAAAATCTACTCTGGTGAGTTAAACGTTGATGCAATGATTCAAAGGCTAGCCCATTACAAGGAATCATCTGACAAAAGGAAACAATCAATTTTTGAGTGCGTGATTGCAAATTTGTTGGACCAGTACCAGTTTTT...

Protein

Download Protein FASTA

166 aa · TkA07G248410|TK1151|PROTEIN

MEPLWLESPNTSSMMKNNGRPDSSTLKQYGIDIKGEANSYFFKIYSGELNVDAMIQRLAHYKESSDKRKQSIFECVIANLLDQYQFFSGKYPKKELKFAADLYGLLIKNKLLTSTTLGVALRDVLDALRKPANSKVSTNNFLVICFSTPNTCNCFTNDENFVYVDL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G248410`
TK1151 ID	TkA07G248410
OH-1004 ID	LXL04_028911
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.100
Protein coverage (%)	TK1151 81.928 / OH-1004 24.635 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G248410`
Location	Chr07:61957037-61961404 (+)
Description	Similar to At5g39000: Putative receptor-like protein kinase At5g39000
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_028911` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009741 response to brassinosteroid Biological Process GO:0009826 unidimensional cell growth Biological Process GO:0010038 response to metal ion Biological Process GO:0010183 pollen tube guidance Biological Process GO:0010483 pollen tube reception Biological Process GO:0005576 extracellular region Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009536 plastid Cellular Component GO:0043680 filiform apparatus Cellular Component GO:0004672 protein kinase activity Molecular Function GO:0004674 protein serine/threonine kinase activity Molecular Function
KEGG gene cross-reference	ath:AT1G30570 ath:AT3G46290 ath:AT5G38990 ath:AT5G39000 ath:AT5G59700 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.505

Rank 1 · TkA07G248410 · TK1151

Nucleus0.417

Rank 2 · TkA07G248410 · TK1151

Cell membrane0.082

Rank 3 · TkA07G248410 · TK1151

Mitochondrion0.074

Rank 4 · TkA07G248410 · TK1151

Endoplasmic reticulum0.071

Rank 5 · TkA07G248410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16417CNOT1_TTP_bind12-136 aa

PF25097ARM_Cnot155-83 aa

PF25097ARM_Cnot193-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G248410	`PF16417`	CNOT1_TTP_bind	12	136	3.5e-37	128.2
TkA07G248410	`PF25097`	ARM_Cnot1	55	83	0.11	12.8
TkA07G248410	`PF25097`	ARM_Cnot1	93	131	0.11	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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