TkA07G231200 | RubberDandelionOmics

Gene overview

TkA07G231200

Reference: TK1151 Chr: Chr07 Coordinates: 57913782-57915011 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

678 bp · TkA07G231200|TK1151|cDNA

ATGGGCATTTTCGTCCAGAAGCAACATGCAATAGGGCAAGACGCAGATTCAAAATTCTTCATTGGGGTTCTGGATGTTTATGGATTTGAGAGTTTCAAGACAAACAATTTTGAGCAGTTCTGCATTAATCTGACTAATGAGAAACTTCAGCAACATTTCAATAAGCATATATTCAAGATGGAACAAGAAGAATATACACGGGAGGAAATAGACTGGAGTTACATACAGTTTGAGGACAATCAAGACATTTTAGATCTGAT...

CDS

Download CDS FASTA

678 bp · TkA07G231200|TK1151|CDS

ATGGGCATTTTCGTCCAGAAGCAACATGCAATAGGGCAAGACGCAGATTCAAAATTCTTCATTGGGGTTCTGGATGTTTATGGATTTGAGAGTTTCAAGACAAACAATTTTGAGCAGTTCTGCATTAATCTGACTAATGAGAAACTTCAGCAACATTTCAATAAGCATATATTCAAGATGGAACAAGAAGAATATACACGGGAGGAAATAGACTGGAGTTACATACAGTTTGAGGACAATCAAGACATTTTAGATCTGAT...

Protein

Download Protein FASTA

225 aa · TkA07G231200|TK1151|PROTEIN

MGIFVQKQHAIGQDADSKFFIGVLDVYGFESFKTNNFEQFCINLTNEKLQQHFNKHIFKMEQEEYTREEIDWSYIQFEDNQDILDLIEKKPGGVLALLDEACMFPRATHETFAEKLYQTFSNHKRFSKPKLAKTDFTICHYAGDVTYQSDFSFGEFAPVFSLVLCCCCPPVRLLLLFGFDAAVVWLPCCCGWLFWAAWFCLVLLLVAAALVLGVVCLGLWFFMFC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G231200`
TK1151 ID	TkA07G231200
OH-1004 ID	LXL04_028851
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	90.200
Protein coverage (%)	TK1151 72.444 / OH-1004 58.182 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G231200

Location Chr07:57913782-57915011 (-)

Description Similar to XI-B: Myosin-8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04600`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At2g33240`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At1g04160`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At5g43900`	Myosin heavy chain that is required for the cell cycle- regulated transport of various organelles and proteins for their segregation.	Peroxisomal localization of a myosin XI isoform in Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci085 Two class XI myosins function in organelle trafficking and root hair development in Arabidopsis.2008 · DOI: 10.1104/pp.107.113654 A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles.2009 · DOI: 10.1104/pp.109.136853 Myosin XIK is a major player in cytoplasm dynamics and is regulated by two amino acids in its tail.2012 · DOI: 10.1093/jxb/err265
`At4g28710`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028851 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0030048 actin filament-based movement Biological Process

GO:0048467 gynoecium development Biological Process

GO:0048767 root hair elongation Biological Process

GO:0051645 Golgi localization Biological Process

GO:0051646 mitochondrion localization Biological Process

GO:0060151 peroxisome localization Biological Process

GO:0090436 leaf pavement cell development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT1G04160

ath:AT1G04600

ath:AT2G33240

ath:AT4G28710

ath:AT5G43900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.539

Rank 1 · TkA07G231200 · TK1151

Nucleus0.200

Rank 2 · TkA07G231200 · TK1151

Endoplasmic reticulum0.157

Rank 3 · TkA07G231200 · TK1151

Mitochondrion0.101

Rank 4 · TkA07G231200 · TK1151

Golgi apparatus0.097

Rank 5 · TkA07G231200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00063Myosin_head13-149 aa

PF07475Hpr_kinase_C21-88 aa

PF20746EndoS_Ig-like25-66 aa

PF04798Baculo_1933-62 aa

PF04798Baculo_19111-138 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G231200	`PF00063`	Myosin_head	13	149	2.2e-60	205.4
TkA07G231200	`PF07475`	Hpr_kinase_C	21	88	0.051	13.8
TkA07G231200	`PF20746`	EndoS_Ig-like	25	66	0.072	13.8
TkA07G231200	`PF04798`	Baculo_19	33	62	0.3	11.3
TkA07G231200	`PF04798`	Baculo_19	111	138	0.3	11.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4I5Q6`	Arabidopsis thaliana	sp\|F4I5Q6\|MYO7_ARATH Myosin-7	83.100%	Swiss-Prot	Medium
`F4IVR7`	Arabidopsis thaliana	sp\|F4IVR7\|MYO10_ARATH Myosin-10	82.400%	Swiss-Prot	Medium
`F4I460`	Arabidopsis thaliana	sp\|F4I460\|MYO8_ARATH Myosin-8	83.000%	Swiss-Prot	Medium
`Q9LKB9`	Arabidopsis thaliana	sp\|Q9LKB9\|MYO6_ARATH Myosin-6	83.000%	Swiss-Prot	Medium
`F4JM19`	Arabidopsis thaliana	sp\|F4JM19\|MYO14_ARATH Myosin-14	80.100%	Swiss-Prot	Medium

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