TkA07G230460 | RubberDandelionOmics

Gene overview

TkA07G230460

Reference: TK1151 Chr: Chr07 Coordinates: 57689465-57690234 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

480 bp · TkA07G230460|TK1151|cDNA

ATGGTTCGCAAACTAATGGATAAGATGACCAAAGAAGGGTTTATTGAAACCTCAAGTAGTCGTAGACTAGGAAAGCGTGTGGTTCATTCTGAAATAACCAACAAGAAACTTGATGAAGTCCGAAAAGCTTTAGACTTTGATGCTTCAGAAAACCTAGCAGCAGGGACGAATAGGTCGACAGTTGGCGCATTCCACTCCATTGGATCAGAGCGCTCACGATCGACTGGCAGACCTGAGTTGCAGCAGAGTGTGTCCAACAC...

CDS

Download CDS FASTA

480 bp · TkA07G230460|TK1151|CDS

ATGGTTCGCAAACTAATGGATAAGATGACCAAAGAAGGGTTTATTGAAACCTCAAGTAGTCGTAGACTAGGAAAGCGTGTGGTTCATTCTGAAATAACCAACAAGAAACTTGATGAAGTCCGAAAAGCTTTAGACTTTGATGCTTCAGAAAACCTAGCAGCAGGGACGAATAGGTCGACAGTTGGCGCATTCCACTCCATTGGATCAGAGCGCTCACGATCGACTGGCAGACCTGAGTTGCAGCAGAGTGTGTCCAACAC...

Protein

Download Protein FASTA

159 aa · TkA07G230460|TK1151|PROTEIN

MVRKLMDKMTKEGFIETSSSRRLGKRVVHSEITNKKLDEVRKALDFDASENLAAGTNRSTVGAFHSIGSERSRSTGRPELQQSVSNTHNNNTPTSNNQVLQPVSSIESYAGMKRGRNGNQDDKMDSSQTTINKRFKKASTVKEPVVQNMKRQKSQLQEA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G230460`
TK1151 ID	TkA07G230460
OH-1004 ID	LXL04_028847
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G230460

Location Chr07:57689465-57690234 (-)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: F4HRV8`	Required for normal meiosis in male and female gametophytes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0506800`	Essential factor for meiotic homologous chromosome pairing (synapsis).	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis.2004 · DOI: 10.1007/s00438-003-0934-z PAIR2 is essential for homologous chromosome synapsis in rice meiosis I.2006 · DOI: 10.1242/jcs.02736

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028847 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007129 homologous chromosome pairing at meiosis Biological Process

GO:0007130 synaptonemal complex assembly Biological Process

GO:0009554 megasporogenesis Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0051026 chiasma assembly Biological Process

GO:0051598 meiotic recombination checkpoint signaling Biological Process

GO:0000228 nuclear chromosome Cellular Component

GO:0000775 chromosome, centromeric region Cellular Component

GO:0000785 chromatin Cellular Component

GO:0000794 condensed nuclear chromosome Cellular Component

GO:0000795 synaptonemal complex Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G67370

dosa:Os09g0506800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.942

Rank 1 · TkA07G230460 · TK1151

Cytoplasm0.166

Rank 2 · TkA07G230460 · TK1151

Mitochondrion0.021

Rank 3 · TkA07G230460 · TK1151

Cell membrane0.018

Rank 4 · TkA07G230460 · TK1151

Endoplasmic reticulum0.008

Rank 5 · TkA07G230460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16600Caskin1-CID53-77 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G230460	`PF16600`	Caskin1-CID	53	77	0.16	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4HRV8`	Arabidopsis thaliana	sp\|F4HRV8\|ASY1_ARATH Meiosis-specific protein ASY1	42.000%	Swiss-Prot	Medium
`Q76CY8`	Oryza sativa subsp. japonica	sp\|Q76CY8\|PAIR2_ORYSJ Meiosis-specific protein PAIR2	37.700%	Swiss-Prot	Medium

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