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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G173160
Reference: TK1151 Chr: Chr07 Coordinates: 44410411-44421328 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1786 bp · TkA07G173160|TK1151|cDNA

TCCCTCCCAACCCCCTCACCCCACCCCACTCCACGTAAATAATACGACATTTTCATCAACTCAGAACTAAAACTTACTGAAAAGAATGGCAGTGTCACTCTCCGCCGCCGGAGTCCGGCACCTACATGGCAGCTCTGCATTGGCTCCTAGGGACTTGAGGCCTTTATATTGCGACTTAATGGGGAAAAAGCTAAATTTCAGTCAAAGGGTTCAAAAGAAAAACAATGTTAAATCAAGCATACAAATGACGCTCACCACCA...

CDS

Download CDS FASTA

1533 bp · TkA07G173160|TK1151|CDS

ATGGCAGTGTCACTCTCCGCCGCCGGAGTCCGGCACCTACATGGCAGCTCTGCATTGGCTCCTAGGGACTTGAGGCCTTTATATTGCGACTTAATGGGGAAAAAGCTAAATTTCAGTCAAAGGGTTCAAAAGAAAAACAATGTTAAATCAAGCATACAAATGACGCTCACCACCATTGCCACAAGTGAGGGAAAGTTAAGGGACTTGGAGATGGAGAAACGGGACCCGAGAACCGTTGTGGCGGTGATACTTGGCGGTGG...

Protein

Download Protein FASTA

510 aa · TkA07G173160|TK1151|PROTEIN

MAVSLSAAGVRHLHGSSALAPRDLRPLYCDLMGKKLNFSQRVQKKNNVKSSIQMTLTTIATSEGKLRDLEMEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNFGVTFGDGFVEALSATQTPGVEGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIDGKGRVLSFSEKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G173160
TK1151 IDTkA07G173160
OH-1004 IDLXL04_028586
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G173160
LocationChr07:44410411-44421328 (-)
DescriptionSimilar to ADG2: Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19220 This protein plays a role in synthesis of starch. No verified direct reference in this release
At1g27680 This protein plays a role in synthesis of starch. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0735000 Involved in synthesis of starch.
Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).2007 · DOI: 10.1007/s11103-007-9153-z
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028586 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005978 glycogen biosynthetic process Biological Process
GO:0019252 starch biosynthetic process Biological Process
GO:0009501 amyloplast Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0010170 glucose-1-phosphate adenylyltransferase complex Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0008878 glucose-1-phosphate adenylyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G27680
ath:AT5G19220
bvg:104889614
dosa:Os03g0735000
sot:102582750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.960
Rank 1 · TkA07G173160 · TK1151
Mitochondrion0.060
Rank 2 · TkA07G173160 · TK1151
Cytoplasm0.032
Rank 3 · TkA07G173160 · TK1151
Peroxisome0.026
Rank 4 · TkA07G173160 · TK1151
Nucleus0.018
Rank 5 · TkA07G173160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24894Hexapep_GlmU39-59 aa
PF00483NTP_transferase81-356 aa
PF12804NTP_transf_381-229 aa
PF25247LbH_GLGC375-509 aa
PF25087GMPPB_C383-429 aa
PF24894Hexapep_GlmU384-437 aa
PF25084LbH_EIF2B391-427 aa
PF00132Hexapep405-428 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G173160PF24894Hexapep_GlmU39593e-0731.3
TkA07G173160PF00483NTP_transferase813569.3e-70235.7
TkA07G173160PF12804NTP_transf_3812290.007317.2
TkA07G173160PF25247LbH_GLGC3755091.7e-49168.0
TkA07G173160PF25087GMPPB_C3834299.9e-0729.2
TkA07G173160PF24894Hexapep_GlmU3844373e-0731.3
TkA07G173160PF25084LbH_EIF2B3914276.6e-0626.8
TkA07G173160PF00132Hexapep4054280.001518.8
TkA07G173160PF24894Hexapep_GlmU4484833e-0731.3
TkA07G173160PF25087GMPPB_C4505099.9e-0729.2
TkA07G173160PF25084LbH_EIF2B4504766.6e-0626.8
TkA07G173160PF00132Hexapep4504740.001518.8
TkA07G173160PF00132Hexapep5005090.001518.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P55229Arabidopsis thalianasp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic81.300%Swiss-ProtHigh
P55230Arabidopsis thalianasp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic68.200%Swiss-ProtHigh
Q6AVT2Oryza sativa subsp. japonicasp|Q6AVT2|GLGL1_ORYSJ Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic81.600%Swiss-ProtHigh

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