TkA07G167920 | RubberDandelionOmics

Gene overview

TkA07G167920

Reference: TK1151 Chr: Chr07 Coordinates: 43079583-43083531 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1791 bp · TkA07G167920|TK1151|cDNA

ATGGAGGTCAACCCCAAACTTCCTGAGCATTTGCATTTTGATGATGAACTTGATCATGATGATGGGGATTTCGTGTATGAATATGAATCTGAAGTTGGAGAAGACAACAATACAGACGTGGAAGTTGGAGAAGACAACAAAATGGAACCTGCACTTGGAGAAGGCAACGATGCAGTCCTTGTATTTGGATCAGATAACAGTAATGACTACAGTAGCAACTCAGACTCTGAACATGAAATCCAACTCCCACTTCCTCCTAG...

CDS

Download CDS FASTA

1791 bp · TkA07G167920|TK1151|CDS

ATGGAGGTCAACCCCAAACTTCCTGAGCATTTGCATTTTGATGATGAACTTGATCATGATGATGGGGATTTCGTGTATGAATATGAATCTGAAGTTGGAGAAGACAACAATACAGACGTGGAAGTTGGAGAAGACAACAAAATGGAACCTGCACTTGGAGAAGGCAACGATGCAGTCCTTGTATTTGGATCAGATAACAGTAATGACTACAGTAGCAACTCAGACTCTGAACATGAAATCCAACTCCCACTTCCTCCTAG...

Protein

Download Protein FASTA

596 aa · TkA07G167920|TK1151|PROTEIN

MEVNPKLPEHLHFDDELDHDDGDFVYEYESEVGEDNNTDVEVGEDNKMEPALGEGNDAVLVFGSDNSNDYSSNSDSEHEIQLPLPPRPNRKRGMTRLAKLRTNYTRSGGKKKHVKFDELGRFLGKNRALFVSFLGDLVRQRVGIRVYSWKAVTPEFRDKLWEEMTRFFVVDECRRKFVMNRMGMLLRNFRRKIYAKYIKPNLGNPTKLAKIPRCYRTLLKDQDDWNNFDVSQRTIEARKHLTYSHRLGRGGYTTLREKLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G167920`
TK1151 ID	TkA07G167920
OH-1004 ID	LXL04_020682
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.200
Protein coverage (%)	TK1151 60.906 / OH-1004 88.808 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G167920`
Location	Chr07:43079583-43083531 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_020682` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.942

Rank 1 · TkA07G167920 · TK1151

Cytoplasm0.124

Rank 2 · TkA07G167920 · TK1151

Mitochondrion0.020

Rank 3 · TkA07G167920 · TK1151

Cell membrane0.017

Rank 4 · TkA07G167920 · TK1151

Extracellular0.008

Rank 5 · TkA07G167920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11247Phage_T7_5540-62 aa

PF25238OGFOD2-like144-189 aa

PF11247Phage_T7_55296-319 aa

PF26133DUF8039449-478 aa

PF01390SEA477-510 aa

PF11247Phage_T7_55488-512 aa

PF11247Phage_T7_55522-537 aa

PF01390SEA537-591 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G167920	`PF11247`	Phage_T7_55	40	62	1.2	10.3
TkA07G167920	`PF25238`	OGFOD2-like	144	189	0.066	13.9
TkA07G167920	`PF11247`	Phage_T7_55	296	319	1.2	10.3
TkA07G167920	`PF26133`	DUF8039	449	478	0.00061	20.9
TkA07G167920	`PF01390`	SEA	477	510	0.69	10.8
TkA07G167920	`PF11247`	Phage_T7_55	488	512	1.2	10.3
TkA07G167920	`PF11247`	Phage_T7_55	522	537	1.2	10.3
TkA07G167920	`PF01390`	SEA	537	591	0.69	10.8
TkA07G167920	`PF11247`	Phage_T7_55	547	567	1.2	10.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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