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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G166030
Reference: TK1151 Chr: Chr07 Coordinates: 42622452-42623152 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

594 bp · TkA07G166030|TK1151|cDNA

ATGTACTCCAAATGCGGCGCTCTCCCTTCCGCCCGCCAGCTGTTCGATGTAATGCCCCAACGAGACCTTGTCACATGGGATTCGATTTTAGCAGCTTACGCATCTACTTGCGATTCCCATTCAGTTACGTTTGGCTTCCGAATGTGTTCATGGCTACTCTGCCAAAGTTGGATTGGAATCGGAGGTGTTCATTCTGGAGCTCTTGTCAACATTTACACCAAGTTTGACAAGGTACGAGAGGCTAGAATAGTGTTTGATAA...

CDS

Download CDS FASTA

594 bp · TkA07G166030|TK1151|CDS

ATGTACTCCAAATGCGGCGCTCTCCCTTCCGCCCGCCAGCTGTTCGATGTAATGCCCCAACGAGACCTTGTCACATGGGATTCGATTTTAGCAGCTTACGCATCTACTTGCGATTCCCATTCAGTTACGTTTGGCTTCCGAATGTGTTCATGGCTACTCTGCCAAAGTTGGATTGGAATCGGAGGTGTTCATTCTGGAGCTCTTGTCAACATTTACACCAAGTTTGACAAGGTACGAGAGGCTAGAATAGTGTTTGATAA...

Protein

Download Protein FASTA

197 aa · TkA07G166030|TK1151|PROTEIN

MYSKCGALPSARQLFDVMPQRDLVTWDSILAAYASTCDSHSVTFGFRMCSWLLCQSWIGIGGVHSGALVNIYTKFDKVREARIVFDNMEEHDRDVVLWNVMLKAYVKSGVQEDTFQFLSEFHKNDFVSPDIGSLQCFLNGFSEEDNSSKNYKEQVQAYAIKLSFTNDNSPNVVSWNKTMSQYHQSGDHLSAIKSSLT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G166030
TK1151 IDTkA07G166030
OH-1004 IDLXL04_028524
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)77.500
Protein coverage (%)TK1151 98.477 / OH-1004 17.907
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G166030
LocationChr07:42622452-42623152 (-)
DescriptionSimilar to PCMP-H53: Pentatricopeptide repeat-containing protein At4g33170
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At4g25270 Pentatricopeptide repeat-containing protein At4g25270, chloroplastic. No verified direct reference in this release
At5g65570 Pentatricopeptide repeat-containing protein At5g65570. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At3g05240 Putative pentatricopeptide repeat-containing protein At3g05240. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028524 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G33170
ath:AT5G09950
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.579
Rank 1 · TkA07G166030 · TK1151
Plastid0.244
Rank 2 · TkA07G166030 · TK1151
Nucleus0.054
Rank 3 · TkA07G166030 · TK1151
Cytoplasm0.051
Rank 4 · TkA07G166030 · TK1151
Cell membrane0.009
Rank 5 · TkA07G166030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_22-21 aa
PF01535PPR2-22 aa
PF12854PPR_14-18 aa
PF13812PPR_321-40 aa
PF13041PPR_222-36 aa
PF12854PPR_122-32 aa
PF01535PPR24-35 aa
PF13041PPR_267-90 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G166030PF13041PPR_22213.4e-1453.4
TkA07G166030PF01535PPR2223.6e-1040.1
TkA07G166030PF12854PPR_14180.03314.6
TkA07G166030PF13812PPR_321400.06514.0
TkA07G166030PF13041PPR_222363.4e-1453.4
TkA07G166030PF12854PPR_122320.03314.6
TkA07G166030PF01535PPR24353.6e-1040.1
TkA07G166030PF13041PPR_267903.4e-1453.4
TkA07G166030PF01535PPR67913.6e-1040.1
TkA07G166030PF12854PPR_168890.03314.6
TkA07G166030PF13812PPR_3681070.06514.0
TkA07G166030PF13812PPR_3861240.06514.0
TkA07G166030PF13041PPR_2931423.4e-1453.4
TkA07G166030PF12854PPR_1931200.03314.6
TkA07G166030PF01535PPR961093.6e-1040.1
TkA07G166030PF06265YutD-like1111560.06114.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317036.500%Swiss-ProtMedium
Q9SB36Arabidopsis thalianasp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270, chloroplastic26.500%Swiss-ProtLow
Q9LSL8Arabidopsis thalianasp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g6557030.800%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial22.300%Swiss-ProtLow
Q9MA95Arabidopsis thalianasp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g0524053.800%Swiss-ProtLow

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