TkA07G165310 | RubberDandelionOmics

Gene overview

TkA07G165310

Reference: TK1151 Chr: Chr07 Coordinates: 42433615-42437911 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2409 bp · TkA07G165310|TK1151|cDNA

TTCAAATATTCATAATTCCCAGTAAAATTCAATTTTCTTTTCCGTCTTTTGTTCTTCTTTTTGTCTCTCTTGAGTCTTGATTTCTAAGCAAAATCTAGGAGAAAGTGTTACGGTCCCCTCCCCGTTAAGCCTTTTTTTTTCCTTCTCCAATTTTAGACCACACCGCGAAATGGTTCTTTATTTGAAGAAAAAAGTGGGCAAAATCACTTGAAAAATCATGGTGCTGGCACTTTGTTTGCAAACTTTCACAAAGCTTGACC...

CDS

Download CDS FASTA

1605 bp · TkA07G165310|TK1151|CDS

ATGGTCGGGAATGGTGGTGTAAAAGTTATTACCAAGAAAGCATATTCAAGATTACTTGTAGACATCACTTGTAGACTGGGTAGTACTTCATTCAGAGGTCTTCAATCGTCAGATCCTGTAATGTCACCTTCTACTTCCACTTCTTCAGTCTCTATCCTTCGTTCATCAGCAAATTCCCCCTTTTCTGGTCTCGTTATTTGCGTCACTGGACTTTCCAAAGAAGCAAGAAAACAAGTTATGGAAGCAACCGAAAGATTGGG...

Protein

Download Protein FASTA

534 aa · TkA07G165310|TK1151|PROTEIN

MVGNGGVKVITKKAYSRLLVDITCRLGSTSFRGLQSSDPVMSPSTSTSSVSILRSSANSPFSGLVICVTGLSKEARKQVMEATERLGGQYSPHLHPRCTHLVVQISGGRKFEHALKHGATNGLFIVTLGWFVDSVRRNVRLREALYVVKHVGENHMAKCDPEIIGGGNSCLPVAMLENAKQPNMIEKSRLFSSSEQDLKRRGSLFSGQSFYVDGEVCAQLQNKVAEAAFGEGGSLVEQWLPGHNASHVVCEESSVQKYLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G165310`
TK1151 ID	TkA07G165310
OH-1004 ID	LXL04_028520
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G165310`
Location	Chr07:42433615-42437911 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_028520` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.797

Rank 1 · TkA07G165310 · TK1151

Cytoplasm0.221

Rank 2 · TkA07G165310 · TK1151

Cell membrane0.060

Rank 3 · TkA07G165310 · TK1151

Endoplasmic reticulum0.033

Rank 4 · TkA07G165310 · TK1151

Lysosome / Vacuole0.021

Rank 5 · TkA07G165310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00533BRCT59-134 aa

PF16589BRCT_261-141 aa

PF12738PTCB-BRCT64-118 aa

PF20415DUF669989-141 aa

PF00533BRCT203-270 aa

PF16589BRCT_2204-277 aa

PF12738PTCB-BRCT232-258 aa

PF20415DUF6699369-516 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G165310	`PF00533`	BRCT	59	134	3.9e-13	50.1
TkA07G165310	`PF16589`	BRCT_2	61	141	9e-05	23.5
TkA07G165310	`PF12738`	PTCB-BRCT	64	118	3.7e-14	53.2
TkA07G165310	`PF20415`	DUF6699	89	141	2.5e-07	31.6
TkA07G165310	`PF00533`	BRCT	203	270	3.9e-13	50.1
TkA07G165310	`PF16589`	BRCT_2	204	277	9e-05	23.5
TkA07G165310	`PF12738`	PTCB-BRCT	232	258	3.7e-14	53.2
TkA07G165310	`PF20415`	DUF6699	369	516	2.5e-07	31.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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