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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G162010
Reference: TK1151 Chr: Chr07 Coordinates: 41623071-41624420 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1275 bp · TkA07G162010|TK1151|cDNA

ATGAAACACAATTTCCTTTCCAAACCTTCAGTTTCAACTGCATTAATAACCGTGTACACACGACTCAACGAGATTAATCCCGCAAGAAAACTCTTCAATGAATCCCAAGATAAATCCTTGGCAGCATGGAATGCTATGATTTCAGGTTACACCCAAAATGGAGTAACAGATAAAGCAATCTCCCTTTTCAAACAAATGCAAAACCTCAAAATCACTCCAAATCCCACAACAATCACCACTATTCTCTCAGCATGTGCTCA...

CDS

Download CDS FASTA

1275 bp · TkA07G162010|TK1151|CDS

ATGAAACACAATTTCCTTTCCAAACCTTCAGTTTCAACTGCATTAATAACCGTGTACACACGACTCAACGAGATTAATCCCGCAAGAAAACTCTTCAATGAATCCCAAGATAAATCCTTGGCAGCATGGAATGCTATGATTTCAGGTTACACCCAAAATGGAGTAACAGATAAAGCAATCTCCCTTTTCAAACAAATGCAAAACCTCAAAATCACTCCAAATCCCACAACAATCACCACTATTCTCTCAGCATGTGCTCA...

Protein

Download Protein FASTA

424 aa · TkA07G162010|TK1151|PROTEIN

MKHNFLSKPSVSTALITVYTRLNEINPARKLFNESQDKSLAAWNAMISGYTQNGVTDKAISLFKQMQNLKITPNPTTITTILSACAQLGALSLGQWVHDLATKYKFNSNIYVSTALIDMYAKCGSIESARQVFDEMPDKNTVTWNAMISGYGLHGHAHEALNIFNKLLDSKSPVTSVTFVSILHACSHGGLVNQAEQIFHTMGSGSTHGVEPLPEHYACMVDLYGRAGHLQTAYNFITKMPIDPGPATWGALLSACKTHK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G162010
TK1151 IDTkA07G162010
OH-1004 IDLXL04_028485
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)94.000
Protein coverage (%)TK1151 100.000 / OH-1004 57.052
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G162010
LocationChr07:41623071-41624420 (-)
DescriptionSimilar to DYW9: Pentatricopeptide repeat-containing protein At4g30700
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g30700 Pentatricopeptide repeat-containing protein At4g30700. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At3g26782 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028485 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0016556 mRNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G11290
ath:AT3G12770
ath:AT4G30700
ath:AT4G33990
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.674
Rank 1 · TkA07G162010 · TK1151
Plastid0.160
Rank 2 · TkA07G162010 · TK1151
Nucleus0.073
Rank 3 · TkA07G162010 · TK1151
Cytoplasm0.036
Rank 4 · TkA07G162010 · TK1151
Cell membrane0.006
Rank 5 · TkA07G162010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N9-90 aa
PF00637Clathrin11-40 aa
PF14559TPR_1912-34 aa
PF01535PPR13-38 aa
PF13041PPR_213-35 aa
PF13428TPR_1413-34 aa
PF24762TPR_IF140-IFT17213-70 aa
PF12854PPR_114-34 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G162010PF29070MSC6_N9905.3e-1246.3
TkA07G162010PF00637Clathrin11400.3711.3
TkA07G162010PF14559TPR_1912343.1e-0524.9
TkA07G162010PF01535PPR13383.1e-37124.9
TkA07G162010PF13041PPR_213351.3e-35122.0
TkA07G162010PF13428TPR_1413347.7e-0523.7
TkA07G162010PF24762TPR_IF140-IFT17213700.09912.0
TkA07G162010PF12854PPR_114341.6e-2382.8
TkA07G162010PF13181TPR_818340.0006320.4
TkA07G162010PF13424TPR_1218350.1513.0
TkA07G162010PF07719TPR_218350.2612.2
TkA07G162010PF17314DUF5360241050.01416.2
TkA07G162010PF22330Rib_mS39_PPR25510.01915.5
TkA07G162010PF00760Cucumo_coat281110.05613.8
TkA07G162010PF13041PPR_241861.3e-35122.0
TkA07G162010PF13812PPR_341855.2e-1246.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SUH6Arabidopsis thalianasp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g3070061.500%Swiss-ProtHigh
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399041.700%Swiss-ProtMedium
Q9LW32Arabidopsis thalianasp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial42.500%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic41.800%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333039.600%Swiss-ProtMedium

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