TkA07G161890 | RubberDandelionOmics

Gene overview

TkA07G161890

Reference: TK1151 Chr: Chr07 Coordinates: 41593541-41595088 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

909 bp · TkA07G161890|TK1151|cDNA

ATGCAAATTGCCACCAAAGCTTTTAGACCGGATCAAGTTTTAGGTGTGGGCGGTTTTGGAATTGTTTATAAAGGTGTAATAGATGAGAATGTGAGGCCTTTTTATTCTAAAATCCAAGTTGCCATTAAGCAACTCGATCCCGAAGGAATTCAAGGGGACAAGGAATGGCTGGCTGAAGTCAATTATTTAGGACAACTTCAACACCCTAATCTAGTGAAGCTAATTGGCTACTGCTGTGAGGAACATCATCGTCTTTTAGT...

CDS

Download CDS FASTA

909 bp · TkA07G161890|TK1151|CDS

ATGCAAATTGCCACCAAAGCTTTTAGACCGGATCAAGTTTTAGGTGTGGGCGGTTTTGGAATTGTTTATAAAGGTGTAATAGATGAGAATGTGAGGCCTTTTTATTCTAAAATCCAAGTTGCCATTAAGCAACTCGATCCCGAAGGAATTCAAGGGGACAAGGAATGGCTGGCTGAAGTCAATTATTTAGGACAACTTCAACACCCTAATCTAGTGAAGCTAATTGGCTACTGCTGTGAGGAACATCATCGTCTTTTAGT...

Protein

Download Protein FASTA

302 aa · TkA07G161890|TK1151|PROTEIN

MQIATKAFRPDQVLGVGGFGIVYKGVIDENVRPFYSKIQVAIKQLDPEGIQGDKEWLAEVNYLGQLQHPNLVKLIGYCCEEHHRLLVYEYMSFGSMENHIFRLGASVILSWSKRIKIALDAAKGLDFLHDAECPIIYRDFKTSNILLDRVRHSETKLQEFNAKLSDFGLAKDGPMGDDTHVSTRVMGTYGYAAPEYISTGHLTTRSDIYGFGVVLLEMLIGRKSIDTSRPSHEHNLVDWARPLLTHDKKLLKILDPRMEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G161890`
TK1151 ID	TkA07G161890
OH-1004 ID	LXL04_028484
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.400
Protein coverage (%)	TK1151 100.000 / OH-1004 80.769 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G161890

Location Chr07:41593541-41595088 (+)

Description Similar to PBL17: Probable serine/threonine-protein kinase PBL17

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g07180`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g01020`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g02290`	May play a role in the regulation of plant growth and development (Probable).	No verified direct reference in this release
`At2g05940`	Serine/threonine-protein kinase involved in disease resistance.	xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 Pseudomonas syringae Effector AvrPphB Suppresses AvrB-Induced Activation of RPM1 but Not AvrRpm1-Induced Activation.2015 · DOI: 10.1094/mpmi-08-14-0248-r
`At2g28930`	Possible bi-functional kinase.	Light-induced stomatal opening is affected by the guard cell protein kinase APK1b.2014 · DOI: 10.1371/journal.pone.0097161

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028484 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0032491 detection of molecule of fungal origin Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process

GO:1903428 positive regulation of reactive oxygen species biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G07570

ath:AT2G05940

ath:AT2G07180

ath:AT5G01020

ath:AT5G02290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.634

Rank 1 · TkA07G161890 · TK1151

Cytoplasm0.299

Rank 2 · TkA07G161890 · TK1151

Nucleus0.210

Rank 3 · TkA07G161890 · TK1151

Endoplasmic reticulum0.046

Rank 4 · TkA07G161890 · TK1151

Golgi apparatus0.036

Rank 5 · TkA07G161890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr11-295 aa

PF00069Pkinase11-293 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G161890	`PF07714`	PK_Tyr_Ser-Thr	11	295	6.8e-44	150.8
TkA07G161890	`PF00069`	Pkinase	11	293	7.3e-44	150.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H1E3`	Arabidopsis thaliana	sp\|Q8H1E3\|PBL17_ARATH Probable serine/threonine-protein kinase PBL17	69.200%	Swiss-Prot	High
`Q8GXZ3`	Arabidopsis thaliana	sp\|Q8GXZ3\|PBL8_ARATH Probable serine/threonine-protein kinase PBL8	65.200%	Swiss-Prot	High
`P43293`	Arabidopsis thaliana	sp\|P43293\|PBL11_ARATH Probable serine/threonine-protein kinase PBL11	59.900%	Swiss-Prot	High
`Q9ZUF4`	Arabidopsis thaliana	sp\|Q9ZUF4\|RIPK_ARATH Serine/threonine-protein kinase RIPK	61.500%	Swiss-Prot	High
`P46573`	Arabidopsis thaliana	sp\|P46573\|PBL10_ARATH Probable serine/threonine-protein kinase PBL10	59.500%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card