TkA07G153780 | RubberDandelionOmics

Gene overview

TkA07G153780

Reference: TK1151 Chr: Chr07 Coordinates: 39566458-39568029 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

906 bp · TkA07G153780|TK1151|cDNA

CCATCAGTTAATTTGAAAATTGAGATTTGAGCATGCGCCGGAACTTCAATCGTCATTTTCCCTTCCCTATGTTGGTAATGATGGCTGTAATTTTTGCATTACATGCTCAATCAATTGTACCGATGGATTCTTACTCGTCCTTTTCAACCATCAATCCACAATTTGTAAACCCTAACTCTCCAATTGTTTCCCGCTCCGGCTTCTCAACCACAATCGGTACTACGCAGAAATCGAAGCAAAGTACCAAATCGCTTAAGCAC...

CDS

Download CDS FASTA

522 bp · TkA07G153780|TK1151|CDS

ATGAAAAGGGAAAGGCTTGATGAAACACATGATACAAAGAGAACAAAGCATCATAAAACAGGCACACCTTCTGCACCTGTAGCTCCTCAGGATGTTGAACTTGAAGAATCTGGTGACATTGATGTGGTGGAGGTAGATGTTGAAGTAGAAGGTGAAGATGACGGTGTAAAAGTCGAAACAGAACGGTGGTCTGAGCCAAGAAATGAAATAACTGAAGATATAAATGTTCTTTCTTTTTGGAAAGCTCATCAATATCGTTA...

Protein

Download Protein FASTA

173 aa · TkA07G153780|TK1151|PROTEIN

MKRERLDETHDTKRTKHHKTGTPSAPVAPQDVELEESGDIDVVEVDVEVEGEDDGVKVETERWSEPRNEITEDINVLSFWKAHQYRYPELASMARDILSIPVSTVASESAFSNGGRVLDQYRSSLSHKNVEALICTKDWLFGITGDEELCLQDLTDDIMELDSKGNNTHEVMQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G153780`
TK1151 ID	TkA07G153780
OH-1004 ID	LXL04_028412
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	82.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G153780`
Location	Chr07:39566458-39568029 (-)
Description	Similar to Putative AC9 transposase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_028412` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0009791 post-embryonic development Biological Process GO:0032196 transposition Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference	ath:AT3G42170 dosa:Os03g0733400 dosa:Os05g0239150 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.960

Rank 1 · TkA07G153780 · TK1151

Cytoplasm0.150

Rank 2 · TkA07G153780 · TK1151

Mitochondrion0.014

Rank 3 · TkA07G153780 · TK1151

Cell membrane0.014

Rank 4 · TkA07G153780 · TK1151

Endoplasmic reticulum0.008

Rank 5 · TkA07G153780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05699Dimer_Tnp_hAT67-140 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G153780	`PF05699`	Dimer_Tnp_hAT	67	140	7.1e-30	103.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card