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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G144560
Reference: TK1151 Chr: Chr07 Coordinates: 37333763-37336084 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2322 bp · TkA07G144560|TK1151|cDNA

ATGGAAATTAGAACCACAACGCAATTGGCAAATTTCCTGCAAATTTGCATTGACAAAAAATCTCATAAAAATGGAAAGCTCCTCCATGCTCATATCCTCCGCACTGGTCTTTTTTCCGATACCTTTCTATCAAACCGCTTAATCGAGTTGTATCACAAATGTGGTCGCTTAATCAAAGCACGCCGAGTGTTTGATAAAATGCCACACAAAAACCTCTTTTCCTGGCACGCAATGTTAAGTGCTTTCTGCAAGATGGGTGA...

CDS

Download CDS FASTA

2322 bp · TkA07G144560|TK1151|CDS

ATGGAAATTAGAACCACAACGCAATTGGCAAATTTCCTGCAAATTTGCATTGACAAAAAATCTCATAAAAATGGAAAGCTCCTCCATGCTCATATCCTCCGCACTGGTCTTTTTTCCGATACCTTTCTATCAAACCGCTTAATCGAGTTGTATCACAAATGTGGTCGCTTAATCAAAGCACGCCGAGTGTTTGATAAAATGCCACACAAAAACCTCTTTTCCTGGCACGCAATGTTAAGTGCTTTCTGCAAGATGGGTGA...

Protein

Download Protein FASTA

773 aa · TkA07G144560|TK1151|PROTEIN

MEIRTTTQLANFLQICIDKKSHKNGKLLHAHILRTGLFSDTFLSNRLIELYHKCGRLIKARRVFDKMPHKNLFSWHAMLSAFCKMGDINEAHQLFDKMPERNSVSWNTLISALVHNGSDQKALNLYQKMNQSGFLPTNFTLASVLSACGALKHLTCGCSCHAFATKIGLDNNIYVGNALLAMYAKCGHIQNAVNTFENLPEVNEVSFTTMMGALGETDQINEAFHMFQSMHRIGIQIDAISMSSILGVCARSENNQLGQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G144560
TK1151 IDTkA07G144560
OH-1004 IDLXL04_028336
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G144560
LocationChr07:37333763-37336084 (-)
DescriptionSimilar to PCMP-E35: Pentatricopeptide repeat-containing protein At4g20770
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g20770 Pentatricopeptide repeat-containing protein At4g20770. No verified direct reference in this release
At3g02330 Involved in C-to-U editing of mitochondrial RNA.
MEF13 Requires MORF3 and MORF8 for RNA Editing at Eight Targets in Mitochondrial mRNAs in Arabidopsis thaliana.2015 · DOI: 10.1016/j.molp.2015.05.008
At1g18485 Pentatricopeptide repeat-containing protein At1g18485. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028336 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0060090 molecular adaptor activity Molecular Function
KEGG gene cross-reference
ath:AT3G02330
ath:AT4G20770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.650
Rank 1 · TkA07G144560 · TK1151
Plastid0.203
Rank 2 · TkA07G144560 · TK1151
Nucleus0.042
Rank 3 · TkA07G144560 · TK1151
Cytoplasm0.033
Rank 4 · TkA07G144560 · TK1151
Cell membrane0.006
Rank 5 · TkA07G144560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17049AEP15-71 aa
PF10037MRP-S2733-74 aa
PF00637Clathrin39-132 aa
PF13041PPR_240-72 aa
PF01535PPR45-71 aa
PF13812PPR_345-69 aa
PF13428TPR_1446-66 aa
PF14559TPR_1946-71 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G144560PF17049AEP15710.001218.8
TkA07G144560PF10037MRP-S2733740.0115.6
TkA07G144560PF00637Clathrin391320.009716.4
TkA07G144560PF13041PPR_240728.3e-92301.9
TkA07G144560PF01535PPR45711.5e-81263.8
TkA07G144560PF13812PPR_345692.2e-33114.9
TkA07G144560PF13428TPR_1446664.9e-1142.9
TkA07G144560PF14559TPR_1946710.0001422.8
TkA07G144560PF12854PPR_147672e-45152.9
TkA07G144560PF13176TPR_749640.00517.5
TkA07G144560PF18768RNPP_C50831.19.4
TkA07G144560PF17177PPR_long591482.5e-1557.1
TkA07G144560PF22330Rib_mS39_PPR60850.001618.9
TkA07G144560PF28771RMD9_mid651020.03414.6
TkA07G144560PF13041PPR_2711028.3e-92301.9
TkA07G144560PF12854PPR_171982e-45152.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVH0Arabidopsis thalianasp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g2077045.700%Swiss-ProtMedium
Q9FWA6Arabidopsis thalianasp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330, mitochondrial33.800%Swiss-ProtMedium
Q0WN60Arabidopsis thalianasp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g1848529.000%Swiss-ProtLow
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317029.200%Swiss-ProtLow
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365028.200%Swiss-ProtLow

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