TkA07G125560 | RubberDandelionOmics

Gene overview

TkA07G125560

Reference: TK1151 Chr: Chr07 Coordinates: 32514719-32516207 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

621 bp · TkA07G125560|TK1151|cDNA

ATGGTGACAGGTCATTCAATGGGTGGGGCCATATCTGCTTTTTGTGGACTTGATCTTTTGTTGATTTATGGAAAAGAGAATGTTTCTGTGATGACATTTGGACAACCTAGAAATGGAAATGCAGCATTTGCATCATATTATAGTGAAATTGTACCAAATACATTTAGAATAACACATGAACATGATTTGGTATCACATTTGCCTCCTTACTATCAGCATTTGCCACATAAGACATATCACCACTTCCCAAGAGAGGTTAT...

CDS

Download CDS FASTA

621 bp · TkA07G125560|TK1151|CDS

ATGGTGACAGGTCATTCAATGGGTGGGGCCATATCTGCTTTTTGTGGACTTGATCTTTTGTTGATTTATGGAAAAGAGAATGTTTCTGTGATGACATTTGGACAACCTAGAAATGGAAATGCAGCATTTGCATCATATTATAGTGAAATTGTACCAAATACATTTAGAATAACACATGAACATGATTTGGTATCACATTTGCCTCCTTACTATCAGCATTTGCCACATAAGACATATCACCACTTCCCAAGAGAGGTTAT...

Protein

Download Protein FASTA

206 aa · TkA07G125560|TK1151|PROTEIN

MVTGHSMGGAISAFCGLDLLLIYGKENVSVMTFGQPRNGNAAFASYYSEIVPNTFRITHEHDLVSHLPPYYQHLPHKTYHHFPREVISNMRSLMTEENTVVSNYFLLDDDSRLSGIPANRQLTESDCMRVRICEGRLTLLIREPIREENFIIQPKVEFDISITTVSCLLNLGYQAVAYIEASAYIYQDGNEIIFMTILSLDQTISL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G125560`
TK1151 ID	TkA07G125560
OH-1004 ID	LXL04_019793
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	72.900
Protein coverage (%)	TK1151 100.000 / OH-1004 61.383 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G125560`
Location	Chr07:32514719-32516207 (-)
Description	Similar to Lipase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_019793` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000272 polysaccharide catabolic process Biological Process GO:0006629 lipid metabolic process Biological Process GO:0007015 actin filament organization Biological Process GO:0009791 post-embryonic development Biological Process GO:0009826 unidimensional cell growth Biological Process GO:0009860 pollen tube growth Biological Process GO:0010090 trichome morphogenesis Biological Process GO:0010091 trichome branching Biological Process GO:0010154 fruit development Biological Process GO:0016042 lipid catabolic process Biological Process GO:0030048 actin filament-based movement Biological Process GO:0044347 cell wall polysaccharide catabolic process Biological Process
KEGG gene cross-reference	ang:An09g00120 ath:AT1G08730 ath:AT1G54560 ath:AT5G20490 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.325

Rank 1 · TkA07G125560 · TK1151

Nucleus0.157

Rank 2 · TkA07G125560 · TK1151

Extracellular0.153

Rank 3 · TkA07G125560 · TK1151

Lysosome / Vacuole0.119

Rank 4 · TkA07G125560 · TK1151

Plastid0.115

Rank 5 · TkA07G125560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01764Lipase_32-70 aa

PF21295Bact_transglu_N_244-67 aa

PF21295Bact_transglu_N_284-116 aa

PF21295Bact_transglu_N_2145-163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G125560	`PF01764`	Lipase_3	2	70	6.7e-19	68.9
TkA07G125560	`PF21295`	Bact_transglu_N_2	44	67	0.22	12.6
TkA07G125560	`PF21295`	Bact_transglu_N_2	84	116	0.22	12.6
TkA07G125560	`PF21295`	Bact_transglu_N_2	145	163	0.22	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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