TkA07G120490 | RubberDandelionOmics

Gene overview

TkA07G120490

Reference: TK1151 Chr: Chr07 Coordinates: 31252492-31257378 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2280 bp · TkA07G120490|TK1151|cDNA

AAAATCTTCGCTTAATTTACAGAACACCAATCGCCACTTTACTGATATCTCCCCTCTAGAAACTGTTTAGACTTTAGACTTCTCTCTCACACACAAACACCAAACCACCCACTAAAAATCAAGCAACATCTCACTGGACAGGAATTTTCTTTGGATGCTGTTGTTCGTGAACTGTTTGAACTTTGGCGTTTTGTGGGTCTAATTTCAAAGACTTTTCAGCAAATCTGTTGTGTTCGTTGCCATCGTATTCAATTTTGTTT...

CDS

Download CDS FASTA

1683 bp · TkA07G120490|TK1151|CDS

ATGTCGTTCATTGCGGGACTGGTAACCGGGCTTGTAGTGGGGATAGCACTGATTGTTTTGTTTGTTCGGTCGGAGAATGCTCGATCTATGCGTCGCACTGCACTCGCAACAACAATTGCGGCTTTTGCAAGAATGACAGTTGAAGATTCAAAAAAGTTGCTTGCTCCAGAATACTACCCTTCTTGGGTTGTTTTCTCACAGAAACAGAAGTTGACCTGGCTTAATGCCCATCTTACAAAGATCTGGCCCTATGTTGATGA...

Protein

Download Protein FASTA

560 aa · TkA07G120490|TK1151|PROTEIN

MSFIAGLVTGLVVGIALIVLFVRSENARSMRRTALATTIAAFARMTVEDSKKLLAPEYYPSWVVFSQKQKLTWLNAHLTKIWPYVDEAASELIKANLEPTLEQYRPMVLSSLSFSKFTLGTVAPQFTGVSIIEDGGEGITMELEMNWDGNPSIILDIKTRLGVGLPVQVKNIAFTGVFRLIFKPLVPEFPCFGAVSFSLRQKKKMDFTLKVVGGDISAIPGVADALESTIRDAVEDSITWPVRKVIPILPGDYSDLELKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G120490`
TK1151 ID	TkA07G120490
OH-1004 ID	LXL04_028089
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G120490

Location Chr07:31252492-31257378 (+)

Description Similar to SYT5: Synaptotagmin-5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05500`	May be involved in membrane trafficking.	No verified direct reference in this release
`At5g11100`	May be involved in membrane trafficking.	No verified direct reference in this release
`At3g61050`	May be involved in membrane trafficking (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028089 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006869 lipid transport Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0061817 endoplasmic reticulum-plasma membrane tethering Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0012505 endomembrane system Cellular Component

KEGG gene cross-reference

ath:AT1G05500

ath:AT3G61050

ath:AT5G04220

ath:AT5G11100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.533

Rank 1 · TkA07G120490 · TK1151

Cytoplasm0.279

Rank 2 · TkA07G120490 · TK1151

Endoplasmic reticulum0.184

Rank 3 · TkA07G120490 · TK1151

Golgi apparatus0.150

Rank 4 · TkA07G120490 · TK1151

Nucleus0.104

Rank 5 · TkA07G120490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26472DUF81472-43 aa

PF17047SMP_LBD70-248 aa

PF25669SMP_MUG190-like72-134 aa

PF26547PDZD8_N106-245 aa

PF25669SMP_MUG190-like153-236 aa

PF00168C2262-366 aa

PF00168C2435-536 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G120490	`PF26472`	DUF8147	2	43	0.22	12.4
TkA07G120490	`PF17047`	SMP_LBD	70	248	1.5e-13	51.4
TkA07G120490	`PF25669`	SMP_MUG190-like	72	134	2.3e-08	34.6
TkA07G120490	`PF26547`	PDZD8_N	106	245	0.00067	20.2
TkA07G120490	`PF25669`	SMP_MUG190-like	153	236	2.3e-08	34.6
TkA07G120490	`PF00168`	C2	262	366	2.9e-53	179.2
TkA07G120490	`PF00168`	C2	435	536	2.9e-53	179.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L706`	Arabidopsis thaliana	sp\|Q8L706\|SYT5_ARATH Synaptotagmin-5	72.700%	Swiss-Prot	High
`A0JJX5`	Arabidopsis thaliana	sp\|A0JJX5\|SYT4_ARATH Synaptotagmin-4	67.300%	Swiss-Prot	High
`Q9LEX1`	Arabidopsis thaliana	sp\|Q9LEX1\|CLB_ARATH Calcium-dependent lipid-binding protein	39.800%	Swiss-Prot	Medium

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