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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G115650
Reference: TK1151 Chr: Chr07 Coordinates: 30015415-30017025 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1611 bp · TkA07G115650|TK1151|cDNA

ATGATCAGGAAAACTGTTGATCCCTCTTTTAATGCCACCGTGAAAACCTTTTCAGAAAAATGCAAAACCGTAAATCAATTCAAAGAAATCCACGCCCGCCTCATCAAATGTCACCTGCCGGAAAATCCCGTTGCCATCGGACCTCTGCTCTCAGTCCTAGCGACCTCTAAGACTGCTTCTTTCTTCTCCTATGCTCGTTTAATCTTCCAACACCTGCGATTCCGGAACACTTTCATGTACAATACCATGATTCGAGGTTA...

CDS

Download CDS FASTA

1611 bp · TkA07G115650|TK1151|CDS

ATGATCAGGAAAACTGTTGATCCCTCTTTTAATGCCACCGTGAAAACCTTTTCAGAAAAATGCAAAACCGTAAATCAATTCAAAGAAATCCACGCCCGCCTCATCAAATGTCACCTGCCGGAAAATCCCGTTGCCATCGGACCTCTGCTCTCAGTCCTAGCGACCTCTAAGACTGCTTCTTTCTTCTCCTATGCTCGTTTAATCTTCCAACACCTGCGATTCCGGAACACTTTCATGTACAATACCATGATTCGAGGTTA...

Protein

Download Protein FASTA

536 aa · TkA07G115650|TK1151|PROTEIN

MIRKTVDPSFNATVKTFSEKCKTVNQFKEIHARLIKCHLPENPVAIGPLLSVLATSKTASFFSYARLIFQHLRFRNTFMYNTMIRGYLQNGDQASAFFCYIDMLRFGLVPNNYTFPPLIKACSSITNSKFIGYSVHGHVLKLGFEDDQFVGSALVDFYFANSEIGNARTVFDEIPIKDVVLWTNLIDGYGKNEDILNARKLFDEMPERTVISWSAIMAAYSRVNDFHEVIHLFTKMQKLNIKPNDSILVTVLTACANLGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G115650
TK1151 IDTkA07G115650
OH-1004 IDLXL04_028047
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 98.694 / OH-1004 99.623
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G115650
LocationChr07:30015415-30017025 (-)
DescriptionSimilar to PCMP-E78: Pentatricopeptide repeat-containing protein At2g20540
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g66520 Pentatricopeptide repeat-containing protein At5g66520. No verified direct reference in this release
At5g48910 Pentatricopeptide repeat-containing protein At5g48910. No verified direct reference in this release
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At5g06540 Pentatricopeptide repeat-containing protein At5g06540. No verified direct reference in this release
At3g62890 Pentatricopeptide repeat-containing protein At3g62890. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028047 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G20540
ath:AT5G06540
ath:AT5G08305
ath:AT5G48910
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.658
Rank 1 · TkA07G115650 · TK1151
Plastid0.157
Rank 2 · TkA07G115650 · TK1151
Nucleus0.054
Rank 3 · TkA07G115650 · TK1151
Cytoplasm0.035
Rank 4 · TkA07G115650 · TK1151
Peroxisome0.005
Rank 5 · TkA07G115650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_2450-123 aa
PF22330Rib_mS39_PPR64-89 aa
PF13041PPR_276-123 aa
PF12854PPR_176-95 aa
PF13812PPR_376-122 aa
PF01535PPR78-108 aa
PF17177PPR_long78-139 aa
PF29070MSC6_N81-129 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G115650PF23276TPR_24501232.2e-1144.5
TkA07G115650PF22330Rib_mS39_PPR64890.0008619.8
TkA07G115650PF13041PPR_2761231.4e-40137.9
TkA07G115650PF12854PPR_176953.2e-2175.5
TkA07G115650PF13812PPR_3761228.8e-1452.1
TkA07G115650PF01535PPR781081.9e-37125.6
TkA07G115650PF17177PPR_long781393.7e-0833.7
TkA07G115650PF29070MSC6_N811297.7e-1349.0
TkA07G115650PF13428TPR_14831040.2812.7
TkA07G115650PF12854PPR_11071213.2e-2175.5
TkA07G115650PF13041PPR_21531731.4e-40137.9
TkA07G115650PF01535PPR1531741.9e-37125.6
TkA07G115650PF13428TPR_141531740.2812.7
TkA07G115650PF22330Rib_mS39_PPR1651910.0008619.8
TkA07G115650PF13041PPR_21772091.4e-40137.9
TkA07G115650PF12854PPR_11782053.2e-2175.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJY7Arabidopsis thalianasp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g6652041.900%Swiss-ProtMedium
Q9FI80Arabidopsis thalianasp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g4891037.100%Swiss-ProtMedium
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial34.700%Swiss-ProtMedium
Q9FG16Arabidopsis thalianasp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g0654040.200%Swiss-ProtMedium
Q683I9Arabidopsis thalianasp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g6289042.600%Swiss-ProtMedium

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