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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G112790
Reference: TK1151 Chr: Chr07 Coordinates: 29227661-29246929 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3167 bp · TkA07G112790|TK1151|cDNA

ACTAGGGTGATTTGCAGCTGTATCAATTTCAAGTTCACAATTTCTGATCGAGCAAGCGAGAAAGTAATTGCTTATGTTACAATATTAATTTGTCTGACATTGGTGCGGGAACTTGTTAAAACAGTGATGTTTGGTGCTTTTGCACTCCACCAGTTTGACAAATTGACGAAACGAAGTCTACATCTGCATTAAGCAATCTCCGATGGGGGAAAGCAGTCGGAAGTATGAAAACGTGAAAACTGCAGCCGAGATGTTACGGA...

CDS

Download CDS FASTA

2625 bp · TkA07G112790|TK1151|CDS

ATGGGGGAAAGCAGTCGGAAGTATGAAAACGTGAAAACTGCAGCCGAGATGTTACGGAATACACCGTCGAATATAAGGAGGTTAGCTGATGAGATACAGCAGTGTGAGGGAAGACAGAAGTATCTTGCGCAGACTAGAAGCCCCTCGGATGGGGGCGATGTTAGATGGTACTATTCTAAGCTTCCAGTGGCGGAAAACGAGCTAGCTGCTGCTGTCCCACCTACAGAAGTAGTAGGGAAAGGTGATTACTTCCGATTTGG...

Protein

Download Protein FASTA

874 aa · TkA07G112790|TK1151|PROTEIN

MGESSRKYENVKTAAEMLRNTPSNIRRLADEIQQCEGRQKYLAQTRSPSDGGDVRWYYSKLPVAENELAAAVPPTEVVGKGDYFRFGMRDSLAIEASFLQREEELLSNWWREYGECSEGPKGSLSSIPESDPDQKPYNAPTTQSSKLYTDEEERVGVPVKGGLYEVDLLRRHSFPVYWNGDNRRVLRGHWFAVKGSLDWLPLREDVAEQLEFAYRSKVWHRRTFQPSGLFAARVDMPGSSPGLHALFTGEDDTWEAWLYI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G112790
TK1151 IDTkA07G112790
OH-1004 IDLXL04_028014
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G112790
LocationChr07:29227661-29246929 (-)
DescriptionSimilar to SGR2: Phospholipase SGR2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31480 Involved in vacuolar formation or function (e.g. formation of vacuolar membrane 'bulbs'). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028014 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001675 acrosome assembly Biological Process
GO:0007286 spermatid development Biological Process
GO:0007338 single fertilization Biological Process
GO:0009590 detection of gravity Biological Process
GO:0009630 gravitropism Biological Process
GO:0009660 amyloplast organization Biological Process
GO:0009959 negative gravitropism Biological Process
GO:0016042 lipid catabolic process Biological Process
GO:0019433 triglyceride catabolic process Biological Process
GO:0034389 lipid droplet organization Biological Process
GO:0046488 phosphatidylinositol metabolic process Biological Process
GO:0090141 positive regulation of mitochondrial fission Biological Process
KEGG gene cross-reference
ath:AT1G31480
bta:338047
hsa:23259
mmu:72108
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.503
Rank 1 · TkA07G112790 · TK1151
Golgi apparatus0.232
Rank 2 · TkA07G112790 · TK1151
Nucleus0.163
Rank 3 · TkA07G112790 · TK1151
Cell membrane0.156
Rank 4 · TkA07G112790 · TK1151
Mitochondrion0.127
Rank 5 · TkA07G112790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05667CCDC22_CC5-43 aa
PF09551Spore_II_R5-39 aa
PF01166TSC2224-43 aa
PF23463WWE_254-185 aa
PF05667CCDC22_CC286-310 aa
PF06259Abhydrolase_8418-451 aa
PF05667CCDC22_CC475-605 aa
PF30591DUF8655513-554 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G112790PF05667CCDC22_CC5430.005516.6
TkA07G112790PF09551Spore_II_R5390.01316.7
TkA07G112790PF01166TSC2224430.3311.9
TkA07G112790PF23463WWE_2541855.9e-0524.7
TkA07G112790PF05667CCDC22_CC2863100.005516.6
TkA07G112790PF06259Abhydrolase_84184510.2911.5
TkA07G112790PF05667CCDC22_CC4756050.005516.6
TkA07G112790PF30591DUF86555135540.5811.3
TkA07G112790PF02862DDHD5305774.2e-45155.6
TkA07G112790PF14362DUF44075425951.78.6
TkA07G112790PF09551Spore_II_R5466530.01316.7
TkA07G112790PF23463WWE_25655885.9e-0524.7
TkA07G112790PF30591DUF86555656060.5811.3
TkA07G112790PF01166TSC225706100.3311.9
TkA07G112790PF02862DDHD6197434.2e-45155.6
TkA07G112790PF02862DDHD7538164.2e-45155.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W5R2Arabidopsis thalianasp|Q8W5R2|SHGR2_ARATH Phospholipase SGR258.800%Swiss-ProtHigh

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