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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G108590
Reference: TK1151 Chr: Chr07 Coordinates: 28134318-28135403 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1086 bp · TkA07G108590|TK1151|cDNA

ATGAACTTTCCGACAACTCGCCAGCCGGAGTTCATCAGAATTCCGACGAACCCACAAAAGCTACTTACTTTTCTCATAACCTTTCTCATACTATTCCCAAATTCAACACTTTCACAATCATCATACACCTCTGCAATCGATGAAAACCATTCAAATTCATCTGATTCCGCCACTAAATTCCAGCCAAGTTTAGCTGTCGTCATCGGAGTTCTCTCAATCGTCTTCTCATTAACATCTTTAGTCTTAATTTACGCAAAATG...

CDS

Download CDS FASTA

1086 bp · TkA07G108590|TK1151|CDS

ATGAACTTTCCGACAACTCGCCAGCCGGAGTTCATCAGAATTCCGACGAACCCACAAAAGCTACTTACTTTTCTCATAACCTTTCTCATACTATTCCCAAATTCAACACTTTCACAATCATCATACACCTCTGCAATCGATGAAAACCATTCAAATTCATCTGATTCCGCCACTAAATTCCAGCCAAGTTTAGCTGTCGTCATCGGAGTTCTCTCAATCGTCTTCTCATTAACATCTTTAGTCTTAATTTACGCAAAATG...

Protein

Download Protein FASTA

361 aa · TkA07G108590|TK1151|PROTEIN

MNFPTTRQPEFIRIPTNPQKLLTFLITFLILFPNSTLSQSSYTSAIDENHSNSSDSATKFQPSLAVVIGVLSIVFSLTSLVLIYAKCCHVSSSVHHESFGNLPRTRSRFSGIDQTIIDSLPFFTFSTLKGSRNGLECSVCLSAFEDVEVLRLLPKCKHAFHIDCIDQWLRKHSSCPLCRIKVIVDDITLFTYSNSLRFHEPDPSSLGLFIEREGSSRFLKNEEILDKFNHRIMVCDDNDPMIIKNRWSNVSSSDLLFLKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G108590
TK1151 IDTkA07G108590
OH-1004 IDLXL04_027952
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G108590
LocationChr07:28134318-28135403 (+)
DescriptionSimilar to ATL12: Putative RING-H2 finger protein ATL12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g28890 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. No verified direct reference in this release
At2g20030 Putative RING-H2 finger protein ATL12. No verified direct reference in this release
At5g05810 RING-H2 finger protein ATL43. No verified direct reference in this release
At4g30400 RING-H2 finger protein ATL13. No verified direct reference in this release
At2g18650 May be involved in female gametophyte development. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027952 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G72200
ath:AT2G20030
ath:AT4G28890
ath:AT4G40070
ath:AT5G05810
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.345
Rank 1 · TkA07G108590 · TK1151
Cell membrane0.311
Rank 2 · TkA07G108590 · TK1151
Cytoplasm0.274
Rank 3 · TkA07G108590 · TK1151
Endoplasmic reticulum0.131
Rank 4 · TkA07G108590 · TK1151
Lysosome / Vacuole0.077
Rank 5 · TkA07G108590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01484Col_cuticle_N65-97 aa
PF11793FANCL_C78-94 aa
PF17120zf-RING_1680-91 aa
PF17123zf-RING_1182-90 aa
PF13639zf-RING_284-90 aa
PF13923zf-C3HC4_285-90 aa
PF14446Prok-RING_1134-166 aa
PF13920zf-C3HC4_3135-182 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G108590PF01484Col_cuticle_N65972.09.3
TkA07G108590PF11793FANCL_C78942.99.0
TkA07G108590PF17120zf-RING_1680910.01715.5
TkA07G108590PF17123zf-RING_1182902.1e-0937.6
TkA07G108590PF13639zf-RING_284907.7e-1452.4
TkA07G108590PF13923zf-C3HC4_285902.1e-0937.7
TkA07G108590PF14446Prok-RING_11341660.8610.5
TkA07G108590PF13920zf-C3HC4_31351820.001419.1
TkA07G108590PF11789zf-Nse1351780.1113.1
TkA07G108590PF11793FANCL_C1351742.99.0
TkA07G108590PF13639zf-RING_21361797.7e-1452.4
TkA07G108590PF17123zf-RING_111361652.1e-0937.6
TkA07G108590PF13923zf-C3HC4_21361782.1e-0937.7
TkA07G108590PF14634zf-RING_51361790.0002821.5
TkA07G108590PF17120zf-RING_161361760.01715.5
TkA07G108590PF21202SLX1_C1361721.310.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5XF85Arabidopsis thalianasp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL4240.800%Swiss-ProtMedium
Q9SL78Arabidopsis thalianasp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL1243.500%Swiss-ProtMedium
Q5EAE9Arabidopsis thalianasp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL4344.300%Swiss-ProtLow
Q940Q4Arabidopsis thalianasp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL1337.700%Swiss-ProtLow
Q9ZV53Arabidopsis thalianasp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL4936.700%Swiss-ProtLow

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