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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G104250
Reference: TK1151 Chr: Chr07 Coordinates: 27093575-27099071 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3113 bp · TkA07G104250|TK1151|cDNA

CTATATGCATCAATAAATCATATTTATCATATTTTCCTCATTTTCAGTTAGTGGGAGCTAATCAAGTTCCATTTTTTTGACTTCTTGTTCTTTCGAGTTTCTATAGTAAATCAACAAATTCATAGTTACTAATTTCTCATAGAAATTACAAAAAAACTTGAGGGAGGTTGCTAACTTACAATGATCTTTCTTCTTCATTTGTTCATTTCGTGTATTACTTTTGTTATTGTTCATGGACAAGTTCAAACAGGTTATATAAG...

CDS

Download CDS FASTA

2043 bp · TkA07G104250|TK1151|CDS

ATGAATGGGACGGGTCGATATGTGGATGATATATATGATCGAATTTGGTCTCCTTATGGTTCGTTATCATGGGATTCTTTAAGTACGTCTTTAGATATAGATGTAAGTGGAAATGACTATAGAGCCCCTAGTGAAGTCATGCGAACGGCCGCCACTCCCAAAAACGGAACCGAGGGTTTGGAGTTTAGTTGGAATATGTCGGACTCTGAAGAAGCTAAGTTTTATGTTTATATGTACTTTGCTGACGTGGCGGTGTTGGG...

Protein

Download Protein FASTA

680 aa · TkA07G104250|TK1151|PROTEIN

MNGTGRYVDDIYDRIWSPYGSLSWDSLSTSLDIDVSGNDYRAPSEVMRTAATPKNGTEGLEFSWNMSDSEEAKFYVYMYFADVAVLGRNETRQFNVSWNGEPLFGNVRPRAYYASTFYNLRPLVGNKHKISIRRSSGANLPPILNAIEIFRVQEFSEFATFDIDVDAIESIKTTYKVNRNWVGDPCGPKNYSWEGVKCNYTNSNPPRIISINLSTSDLTGQIATSIANLSSLETLDLSNNSLTGQIPDFLENLSSLKLID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G104250
TK1151 IDTkA07G104250
OH-1004 IDLXL04_027912
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 76.836
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G104250
LocationChr07:27093575-27099071 (+)
DescriptionSimilar to At4g29180: Probable LRR receptor-like serine/threonine-protein kinase At4g29180
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g29180 Probable LRR receptor-like serine/threonine-protein kinase At4g29180. No verified direct reference in this release
At2g19230 Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230. No verified direct reference in this release
At2g19190 Involved in innate immune response of plants. No verified direct reference in this release
At2g19210 Putative leucine-rich repeat receptor-like protein kinase At2g19210. No verified direct reference in this release
At1g05700 Probable LRR receptor-like serine/threonine-protein kinase At1g05700. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027912 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009617 response to bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G05700
ath:AT2G19190
ath:AT2G19210
ath:AT2G19230
ath:AT4G29180
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.858
Rank 1 · TkA07G104250 · TK1151
Endoplasmic reticulum0.083
Rank 2 · TkA07G104250 · TK1151
Cytoplasm0.072
Rank 3 · TkA07G104250 · TK1151
Nucleus0.041
Rank 4 · TkA07G104250 · TK1151
Lysosome / Vacuole0.034
Rank 5 · TkA07G104250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12819Malectin_like5-152 aa
PF00560LRR_1209-229 aa
PF13855LRR_8210-266 aa
PF13516LRR_6230-243 aa
PF00560LRR_1231-253 aa
PF12799LRR_4231-267 aa
PF13516LRR_6254-267 aa
PF00560LRR_1255-273 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G104250PF12819Malectin_like51526.6e-40138.1
TkA07G104250PF00560LRR_12092291.8e-0627.6
TkA07G104250PF13855LRR_82102662.4e-0731.1
TkA07G104250PF13516LRR_62302434.28.4
TkA07G104250PF00560LRR_12312531.8e-0627.6
TkA07G104250PF12799LRR_42312671.4e-0525.9
TkA07G104250PF13516LRR_62542674.28.4
TkA07G104250PF00560LRR_12552731.8e-0627.6
TkA07G104250PF04415DUF5152863550.1211.6
TkA07G104250PF03109ABC12893435.1e-0626.5
TkA07G104250PF09716ETRAMP3003340.1412.9
TkA07G104250PF07714PK_Tyr_Ser-Thr3665782.3e-48165.5
TkA07G104250PF17667Pkinase_fungal3664130.0214.3
TkA07G104250PF00069Pkinase3676292.9e-45155.4
TkA07G104250PF03109ABC13674035.1e-0626.5
TkA07G104250PF17667Pkinase_fungal4635550.0214.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGR6Arabidopsis thalianasp|C0LGR6|Y4291_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g2918051.600%Swiss-ProtHigh
O64556Arabidopsis thalianasp|O64556|Y2923_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g1923049.500%Swiss-ProtMedium
O64483Arabidopsis thalianasp|O64483|SIRK_ARATH Senescence-induced receptor-like serine/threonine-protein kinase49.800%Swiss-ProtMedium
O65924Arabidopsis thalianasp|O65924|Y2921_ARATH Putative leucine-rich repeat receptor-like protein kinase At2g1921048.200%Swiss-ProtMedium
C0LGD6Arabidopsis thalianasp|C0LGD6|Y1570_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g0570047.400%Swiss-ProtMedium

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