RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G101970
Reference: TK1151 Chr: Chr07 Coordinates: 26510049-26513373 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2509 bp · TkA07G101970|TK1151|cDNA

ATTAACTCCATATTTCTATATAAATATCTAAGAAGGTGGAAAGGATTGACAGGAACAAAAAAAAAAAAGATGGCAAGCCCAAGCTGTAATCCCGATGTCACATTGGAAGTTACAGAAGAATACCCATACCCATACCCATCGAATGTTTATACCCCCAGTTTTGTTACCGTGAAGCTGAATGGTAAGGACAAGTATGGTATTTGGAAAACACAGATACTATGTCTCTTAGAGAGTCATGGCATGCTTGGTTTCATTGATGG...

CDS

Download CDS FASTA

2313 bp · TkA07G101970|TK1151|CDS

ATGGCAAGCCCAAGCTGTAATCCCGATGTCACATTGGAAGTTACAGAAGAATACCCATACCCATACCCATCGAATGTTTATACCCCCAGTTTTGTTACCGTGAAGCTGAATGGTAAGGACAAGTATGGTATTTGGAAAACACAGATACTATGTCTCTTAGAGAGTCATGGCATGCTTGGTTTCATTGATGGAACACATGTAAACCCTCAGACTAGTGTCACCGGGAAGGAGAAGGTGGGCGACCATGAAACTCGTCAGGG...

Protein

Download Protein FASTA

770 aa · TkA07G101970|TK1151|PROTEIN

MASPSCNPDVTLEVTEEYPYPYPSNVYTPSFVTVKLNGKDKYGIWKTQILCLLESHGMLGFIDGTHVNPQTSVTGKEKVGDHETRQGLWRRSDALVKGWILGSLSEETFRCVLNSLAGKSHQQIDGDFSAKDVWDELQTMYGPPPQLQTVYGPVGLPQRALDKLEDELRARIHQLFYTALLKVRSDEIDRILGNKEVTVIDKITNNGNTALHVAVGATRKSELLQKLLELTPKNTQLLDLRNSDGSTLLHVAAIVGNTQA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G101970
TK1151 IDTkA07G101970
OH-1004 IDLXL04_027896
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G101970
LocationChr07:26510049-26513373 (+)
DescriptionSimilar to ITN1: Ankyrin repeat-containing protein ITN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027896 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G12360
dosa:Os01g0837000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.878
Rank 1 · TkA07G101970 · TK1151
Cytoplasm0.077
Rank 2 · TkA07G101970 · TK1151
Endoplasmic reticulum0.074
Rank 3 · TkA07G101970 · TK1151
Nucleus0.031
Rank 4 · TkA07G101970 · TK1151
Lysosome / Vacuole0.025
Rank 5 · TkA07G101970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14244Retrotran_gag_330-69 aa
PF14223Retrotran_gag_252-142 aa
PF06183DinI157-187 aa
PF13643DUF4145159-230 aa
PF13637Ank_4188-228 aa
PF12796Ank_2190-230 aa
PF13857Ank_5205-247 aa
PF13606Ank_3206-229 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G101970PF14244Retrotran_gag_330690.0001522.2
TkA07G101970PF14223Retrotran_gag_2521420.0008119.9
TkA07G101970PF06183DinI1571870.02815.4
TkA07G101970PF13643DUF41451592300.2712.2
TkA07G101970PF13637Ank_41882283.6e-0627.9
TkA07G101970PF12796Ank_21902301.2e-1868.2
TkA07G101970PF13857Ank_52052475e-1246.6
TkA07G101970PF13606Ank_32062293e-1143.1
TkA07G101970PF00023Ank2062284.1e-1143.2
TkA07G101970PF12796Ank_22213051.2e-1868.2
TkA07G101970PF13857Ank_52382865e-1246.6
TkA07G101970PF13637Ank_42382643.6e-0627.9
TkA07G101970PF13606Ank_32442693e-1143.1
TkA07G101970PF00023Ank2442684.1e-1143.2
TkA07G101970PF13637Ank_42492983.6e-0627.9
TkA07G101970PF13606Ank_32793013e-1143.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser