TkA07G095350 | RubberDandelionOmics

Gene overview

TkA07G095350

Reference: TK1151 Chr: Chr07 Coordinates: 24873342-24875813 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

819 bp · TkA07G095350|TK1151|cDNA

ATGTCACAACTCTGCATCCTGACCAACTTAAATCATTGTACCAGTAAATTGCAAATGTGTACTCCTCCGTTTGAAGATATTGGATCACATGGGACAAAAGTGCTCGTATACAACTTATGGCTCAATGATGAAGGCATTTATGAACTTGATTTTGATTTTGATGATGAGGATATAAAATTGAAAGATGAAGATGTTCGTTTGGCCAAAGACCAAAACCAGTTTAATATAGCAGATGAATTGAAATGTAGGGAAGTAGTCAC...

CDS

Download CDS FASTA

819 bp · TkA07G095350|TK1151|CDS

ATGTCACAACTCTGCATCCTGACCAACTTAAATCATTGTACCAGTAAATTGCAAATGTGTACTCCTCCGTTTGAAGATATTGGATCACATGGGACAAAAGTGCTCGTATACAACTTATGGCTCAATGATGAAGGCATTTATGAACTTGATTTTGATTTTGATGATGAGGATATAAAATTGAAAGATGAAGATGTTCGTTTGGCCAAAGACCAAAACCAGTTTAATATAGCAGATGAATTGAAATGTAGGGAAGTAGTCAC...

Protein

Download Protein FASTA

272 aa · TkA07G095350|TK1151|PROTEIN

MSQLCILTNLNHCTSKLQMCTPPFEDIGSHGTKVLVYNLWLNDEGIYELDFDFDDEDIKLKDEDVRLAKDQNQFNIADELKCREVVTYRPQVSSMKEAIVETNFGFIKAVPALPITGFNIYHKNRVIRVFLCEYIFLTTRVGLDVLFHFNTQALLEDNIVSFQHPSSVGLDVLFHFNTQALLEDNIVGQLFRIGWKMVMFGDETWLTLFPRLFTQHDRISSFFVKDTVKVDHNVSRHLSYALFKSDWNLLILHYLGLDHV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G095350`
TK1151 ID	TkA07G095350
OH-1004 ID	LXL04_039326
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	72.400
Protein coverage (%)	TK1151 99.632 / OH-1004 73.824 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G095350

Location Chr07:24873342-24875813 (-)

Description Similar to MORC1: Protein MICRORCHIDIA 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36290`	Mediator of defense signaling triggered by distinct classes of R proteins.	MORC family ATPases required for heterochromatin condensation and gene silencing.2012 · DOI: 10.1126/science.1221472 Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers.2014 · DOI: 10.1073/pnas.1406611111
`At4g36280`	Mediator of defense signaling triggered by distinct classes of R proteins.	Endosome-associated CRT1 functions early in resistance gene-mediated defense signaling in Arabidopsis and tobacco.2010 · DOI: 10.1105/tpc.109.071662 CRT1 is a nuclear-translocated MORC endonuclease that participates in multiple levels of plant immunity.2012 · DOI: 10.1038/ncomms2279 Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers.2014 · DOI: 10.1073/pnas.1406611111
`At4g36270`	Exhibits ATPase activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039326 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002230 positive regulation of defense response to virus by host Biological Process

GO:0006281 DNA repair Biological Process

GO:0006282 regulation of DNA repair Biological Process

GO:0006325 chromatin organization Biological Process

GO:0006506 GPI anchor biosynthetic process Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process

GO:0031349 positive regulation of defense response Biological Process

GO:0034052 positive regulation of plant-type hypersensitive response Biological Process

GO:0051607 defense response to virus Biological Process

GO:0060966 regulation of gene silencing by regulatory ncRNA Biological Process

GO:0080188 gene silencing by siRNA-directed DNA methylation Biological Process

KEGG gene cross-reference

ath:AT1G19100

ath:AT4G36270

ath:AT4G36280

ath:AT4G36290

hsa:54872

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.363

Rank 1 · TkA07G095350 · TK1151

Mitochondrion0.218

Rank 2 · TkA07G095350 · TK1151

Nucleus0.215

Rank 3 · TkA07G095350 · TK1151

Endoplasmic reticulum0.154

Rank 4 · TkA07G095350 · TK1151

Peroxisome0.100

Rank 5 · TkA07G095350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22524WHD_Nlrc444-68 aa

PF17942Morc6_S569-131 aa

PF22524WHD_Nlrc492-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G095350	`PF22524`	WHD_Nlrc4	44	68	0.11	12.8
TkA07G095350	`PF17942`	Morc6_S5	69	131	4.3e-15	56.7
TkA07G095350	`PF22524`	WHD_Nlrc4	92	99	0.11	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84WV6`	Arabidopsis thaliana	sp\|Q84WV6\|MORC1_ARATH Protein MICRORCHIDIA 1	44.000%	Swiss-Prot	Low
`Q5FV35`	Arabidopsis thaliana	sp\|Q5FV35\|MORC2_ARATH Protein MICRORCHIDIA 2	42.000%	Swiss-Prot	Low
`F4JPP0`	Arabidopsis thaliana	sp\|F4JPP0\|MORC3_ARATH Protein MICRORCHIDIA 3	42.300%	Swiss-Prot	Low

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