TkA07G089170 | RubberDandelionOmics

Gene overview

TkA07G089170

Reference: TK1151 Chr: Chr07 Coordinates: 23221066-23223850 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

660 bp · TkA07G089170|TK1151|cDNA

ATGCATTATTACCATATTAGAATTTTTAAAATCTATATCATCTCACTACTACCACCACCCCCAAGGGCCAAGGCCACTCCCACCCCACAACCCGACCTTATTTCACCTCACGCCAATCATACAATAAGACCACCTCTACCCCAACCCCTCGACCCACCCATTGGGTCTAATATTGAAGTTGTTGAAGTCGGGTGCAATGCGGGTCTCAGCGCGGGTCATACAGGAGGTTCGGGTGCTCATCCGGGTACTCGTGTATCCGG...

CDS

Download CDS FASTA

660 bp · TkA07G089170|TK1151|CDS

ATGCATTATTACCATATTAGAATTTTTAAAATCTATATCATCTCACTACTACCACCACCCCCAAGGGCCAAGGCCACTCCCACCCCACAACCCGACCTTATTTCACCTCACGCCAATCATACAATAAGACCACCTCTACCCCAACCCCTCGACCCACCCATTGGGTCTAATATTGAAGTTGTTGAAGTCGGGTGCAATGCGGGTCTCAGCGCGGGTCATACAGGAGGTTCGGGTGCTCATCCGGGTACTCGTGTATCCGG...

Protein

Download Protein FASTA

219 aa · TkA07G089170|TK1151|PROTEIN

MHYYHIRIFKIYIISLLPPPPRAKATPTPQPDLISPHANHTIRPPLPQPLDPPIGSNIEVVEVGCNAGLSAGHTGGSGAHPGTRVSGYMLKDEGGRVNTKNRDLFLQDLGGSKPPIDYDDPLYLHPSDSAAVTIISFKLTGTENFRVWKSSITRALIARNKLGLVDGSVVRPTEDQTKILKWDRANVVVFSWLLGSVSESICAGHACAEKAFDIWKELN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G089170`
TK1151 ID	TkA07G089170
OH-1004 ID	LXL04_016743
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	61.000
Protein coverage (%)	TK1151 46.575 / OH-1004 5.544 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G089170`
Location	Chr07:23221066-23223850 (-)
Description	Similar to RE1: Retrovirus-related Pol polyprotein from transposon RE1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_016743` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.412

Rank 1 · TkA07G089170 · TK1151

Nucleus0.313

Rank 2 · TkA07G089170 · TK1151

Plastid0.151

Rank 3 · TkA07G089170 · TK1151

Cell membrane0.087

Rank 4 · TkA07G089170 · TK1151

Endoplasmic reticulum0.085

Rank 5 · TkA07G089170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14244Retrotran_gag_3125-172 aa

PF17241Retrotran_gag_4133-156 aa

PF14223Retrotran_gag_2155-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G089170	`PF14244`	Retrotran_gag_3	125	172	2.5e-13	50.3
TkA07G089170	`PF17241`	Retrotran_gag_4	133	156	0.19	12.2
TkA07G089170	`PF14223`	Retrotran_gag_2	155	218	0.047	14.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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