TkA07G087900 | RubberDandelionOmics

Gene overview

TkA07G087900

Reference: TK1151 Chr: Chr07 Coordinates: 22943678-22944755 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

904 bp · TkA07G087900|TK1151|cDNA

CACAAATACAATCATATATGTATATGTGTCTCAAAGGTCGCGTTTACAATAAAATGACAAAAGAAACCCCTATTTAAGCTCACAACTCTATTTTCCAAATAAACCACTAGTACACATTCCAATGGGTTTGCAAATAGTTCATGAGGTCAAATTTGCGTTTATATTTGTGATGTTAAGTGTGATGATGGTTTCATATGTGACACTAGGTGCAGACGACAAGGATAAGGAAGAGTGTACGGAACAATTGGTGGGACTAGCAA...

CDS

Download CDS FASTA

591 bp · TkA07G087900|TK1151|CDS

ATGGGTTTGCAAATAGTTCATGAGGTCAAATTTGCGTTTATATTTGTGATGTTAAGTGTGATGATGGTTTCATATGTGACACTAGGTGCAGACGACAAGGATAAGGAAGAGTGTACGGAACAATTGGTGGGACTAGCAACATGTTTGCCATATGTTGGTGGCAATGCAAAATCTCCGACACCGGATTGTTGTAGTGGTTTAAAAAAAGTATTGAACACCAAACAGAAGTGCTTATGTATGGTGATAAAAGATAGAAATGA...

Protein

Download Protein FASTA

196 aa · TkA07G087900|TK1151|PROTEIN

MGLQIVHEVKFAFIFVMLSVMMVSYVTLGADDKDKEECTEQLVGLATCLPYVGGNAKSPTPDCCSGLKKVLNTKQKCLCMVIKDRNDPDLGLTVNVTLALGLPEVCQAPANVTKCPELLHLAPNSKDAQIFYQYGHSISAAAPANSPTSSASANVTSGTRTKLPSGNVSGSERKLLERGVILMGVMACILSSSIVM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G087900`
TK1151 ID	TkA07G087900
OH-1004 ID	LXL04_027716
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G087900

Location Chr07:22943678-22944755 (-)

Description Similar to YLS3: Protein YLS3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44300`	Probable lipid transfer protein.	No verified direct reference in this release
`At2g44290`	Probable lipid transfer protein.	No verified direct reference in this release
`At1g55260`	Lipid transfer protein involved in seed and ovule maturation and development, probably by regulating the fatty acids homeostasis during suberin and sporopollenin biosynthesis or deposition.	Involvement of lipid transfer proteins in resistance against a non-host powdery mildew in Arabidopsis thaliana.2019 · DOI: 10.1111/mpp.12740
`At3g58550`	Probable lipid transfer protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027716 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0002240 response to molecule of oomycetes origin Biological Process

GO:0006869 lipid transport Biological Process

GO:0009624 response to nematode Biological Process

GO:0009625 response to insect Biological Process

GO:0010150 leaf senescence Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0080027 response to herbivore Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G55260

ath:AT2G44290

ath:AT2G44300

ath:AT3G22600

ath:AT3G58550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.761

Rank 1 · TkA07G087900 · TK1151

Cytoplasm0.098

Rank 2 · TkA07G087900 · TK1151

Endoplasmic reticulum0.089

Rank 3 · TkA07G087900 · TK1151

Extracellular0.086

Rank 4 · TkA07G087900 · TK1151

Lysosome / Vacuole0.050

Rank 5 · TkA07G087900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10260SAYSvFN4-37 aa

PF14368LTP_219-115 aa

PF00234Tryp_alpha_amyl38-115 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G087900	`PF10260`	SAYSvFN	4	37	0.2	12.2
TkA07G087900	`PF14368`	LTP_2	19	115	2.3e-16	60.4
TkA07G087900	`PF00234`	Tryp_alpha_amyl	38	115	2.6e-10	41.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64865`	Arabidopsis thaliana	sp\|O64865\|LTG14_ARATH Non-specific lipid transfer protein GPI-anchored 14	60.000%	Swiss-Prot	High
`O64864`	Arabidopsis thaliana	sp\|O64864\|LTG13_ARATH Non-specific lipid transfer protein GPI-anchored 13	64.000%	Swiss-Prot	Medium
`F4I082`	Arabidopsis thaliana	sp\|F4I082\|LTPG6_ARATH Non-specific lipid transfer protein GPI-anchored 6	44.400%	Swiss-Prot	Medium
`Q9M2G1`	Arabidopsis thaliana	sp\|Q9M2G1\|LTG22_ARATH Non-specific lipid transfer protein GPI-anchored 22	45.000%	Swiss-Prot	Medium

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