Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1554 bp · TkA07G087260|TK1151|cDNA
GAGCTCCAAAACACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACGGTGATCCGAGTACACAGAATTCTTCATCTCTTAATTTCCTCATCTCTTTCGTAATATTCAAATGTAACCCCACATTATCTATCACCTAAACAAGTTTTTGCATTCAGGAAAAATCTAATGGAGACCCAACCTCCAAGTGGTAATGGTGGTGGTGAAATGAGAAAAGTTCACATCGTTTATTTTCTTAGTCATAAAGG...
1173 bp · TkA07G087260|TK1151|CDS
ATGGAGACCCAACCTCCAAGTGGTAATGGTGGTGGTGAAATGAGAAAAGTTCACATCGTTTATTTTCTTAGTCATAAAGGACGTATTGATCATCCACATCTCATTCGCGTCCATCATCATTCACGAAAGGGAGTTAGATTGAGAGACGTTAAGAGATGGTTATCGGAGCTACGGGGGAAAGACATGCCAGAAAGCTTTGCTTGGTCATACAAAAGAAAATACAAGGCTGGATATGTGTGGCAAGACTTACTCGATGAAGA...
Protein
Download Protein FASTA390 aa · TkA07G087260|TK1151|PROTEIN
METQPPSGNGGGEMRKVHIVYFLSHKGRIDHPHLIRVHHHSRKGVRLRDVKRWLSELRGKDMPESFAWSYKRKYKAGYVWQDLLDEDLITPIADNEYVLKGSEISSISITTDLTSNSTEEEDMSKPKSSLSFKIDIKDPTIPSEKEPEVNSINSSTKTSFEIEELPSFGSETSTEDTTKQQDQEDYQFLGSYKQAQIPNQKKTELNSFFDTFLNKNKNDNTIKKDRNPKETTSSKASPSLNKSFGSMGASHMFLNLITCG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G087260 |
|---|---|
| TK1151 ID | TkA07G087260 |
| OH-1004 ID | LXL04_027706 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G087260 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:22780660-22783225 (+) | |||||||||
| Description | Similar to UFC: Protein UPSTREAM OF FLC | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006970 response to osmotic stress Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0010229 inflorescence development Biological Process GO:0010600 regulation of auxin biosynthetic process Biological Process GO:0010928 regulation of auxin mediated signaling pathway Biological Process GO:0051258 protein polymerization Biological Process GO:0051301 cell division Biological Process GO:0051302 regulation of cell division Biological Process GO:0090708 specification of plant organ axis polarity Biological Process GO:1902074 response to salt Biological Process GO:1905392 plant organ morphogenesis Biological Process GO:2000024 regulation of leaf development Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G05577 ath:AT3G46110 ath:AT5G10150 ath:AT5G59790 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06136SOK17-104 aaPF13894zf-C2H2_431-38 aaPF05814Ac76200-217 aaPF00096zf-C2H2340-348 aaPF13894zf-C2H2_4353-372 aaPF00096zf-C2H2353-371 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G087260 | PF06136 | SOK | 17 | 104 | 1.1e-31 | 109.7 |
| TkA07G087260 | PF13894 | zf-C2H2_4 | 31 | 38 | 0.1 | 14.1 |
| TkA07G087260 | PF05814 | Ac76 | 200 | 217 | 0.064 | 14.0 |
| TkA07G087260 | PF00096 | zf-C2H2 | 340 | 348 | 0.34 | 12.2 |
| TkA07G087260 | PF13894 | zf-C2H2_4 | 353 | 372 | 0.1 | 14.1 |
| TkA07G087260 | PF00096 | zf-C2H2 | 353 | 371 | 0.34 | 12.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.