TkA07G079780 | RubberDandelionOmics

Gene overview

TkA07G079780

Reference: TK1151 Chr: Chr07 Coordinates: 20867442-20867873 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

432 bp · TkA07G079780|TK1151|cDNA

TATGCATTGGGTGTGAGTAACTTTGATTCACATCTAACACTAAGACCGTATGCTGAAGGGCTTGTAAATAAGTGTGATGGATTGCCCTTAGCTTTAAGATCATTGGGGAGCCTAATGAGGACAAAAACAGATGAGGGAGAATGGAAGGAGTTGTTGGATAGTGAGATATGGAGATTAGGAAAAGAAGATGAGGTTGTTCCGGTTCTTAGACTAAGTTACAATGATCTTTCTGCCTCTTTGAAGTTGTTGTTTGCATATTG...

CDS

Download CDS FASTA

432 bp · TkA07G079780|TK1151|CDS

TATGCATTGGGTGTGAGTAACTTTGATTCACATCTAACACTAAGACCGTATGCTGAAGGGCTTGTAAATAAGTGTGATGGATTGCCCTTAGCTTTAAGATCATTGGGGAGCCTAATGAGGACAAAAACAGATGAGGGAGAATGGAAGGAGTTGTTGGATAGTGAGATATGGAGATTAGGAAAAGAAGATGAGGTTGTTCCGGTTCTTAGACTAAGTTACAATGATCTTTCTGCCTCTTTGAAGTTGTTGTTTGCATATTG...

Protein

Download Protein FASTA

143 aa · TkA07G079780|TK1151|PROTEIN

YALGVSNFDSHLTLRPYAEGLVNKCDGLPLALRSLGSLMRTKTDEGEWKELLDSEIWRLGKEDEVVPVLRLSYNDLSASLKLLFAYCSLFPKGKDYVFDKKELIWLWMAEGFLHESTTSESMEQLGVEYFKELVVEVIFSTFI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G079780`
TK1151 ID	TkA07G079780
OH-1004 ID	LXL04_023128
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	70.500
Protein coverage (%)	TK1151 97.203 / OH-1004 9.730 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G079780

Location Chr07:20867442-20867873 (+)

Description Similar to RPPL1: Putative disease resistance RPP13-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14470`	Potential disease resistance protein.	No verified direct reference in this release
`At3g07040`	Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae.	The Arabidopsis thaliana RPM1 disease resistance gene product is a peripheral plasma membrane protein that is degraded coincident with the hypersensitive response.1998 · DOI: 10.1073/pnas.95.26.15849
`At3g14460`	Potential disease resistance protein.	No verified direct reference in this release
`At1g12220`	Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae.	No verified direct reference in this release
`At5g63020`	Probable disease resistance protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023128 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051607 defense response to virus Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0004016 adenylate cyclase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0043531 ADP binding Molecular Function

KEGG gene cross-reference

ath:AT3G14460

ath:AT3G14470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.349

Rank 1 · TkA07G079780 · TK1151

Plastid0.291

Rank 2 · TkA07G079780 · TK1151

Endoplasmic reticulum0.194

Rank 3 · TkA07G079780 · TK1151

Nucleus0.105

Rank 4 · TkA07G079780 · TK1151

Cell membrane0.070

Rank 5 · TkA07G079780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23559WHD_DRP90-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G079780	`PF23559`	WHD_DRP	90	139	1e-14	55.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LRR4`	Arabidopsis thaliana	sp\|Q9LRR4\|R13L1_ARATH Putative disease resistance RPP13-like protein 1	49.600%	Swiss-Prot	Medium
`Q39214`	Arabidopsis thaliana	sp\|Q39214\|RPM1_ARATH Disease resistance protein RPM1	43.500%	Swiss-Prot	Medium
`Q9LRR5`	Arabidopsis thaliana	sp\|Q9LRR5\|DRL21_ARATH Putative disease resistance protein At3g14460	36.500%	Swiss-Prot	Medium
`O64973`	Arabidopsis thaliana	sp\|O64973\|RPS5_ARATH Disease resistance protein RPS5	38.700%	Swiss-Prot	Medium
`Q8RXS5`	Arabidopsis thaliana	sp\|Q8RXS5\|DRL40_ARATH Probable disease resistance protein At5g63020	35.300%	Swiss-Prot	Medium

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