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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G048460
Reference: TK1151 Chr: Chr07 Coordinates: 12874742-12878560 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1886 bp · TkA07G048460|TK1151|cDNA

CCACCATCCATCCAGCAAGACTCTTCGCCTTCTCCGAAAAGAATCTCCCTTCAAATAAATCTCTTTAAAACCTCACAAAGATTCCACCAACGTCTTCATTTTCATTCTATTCCTCGATTAATTAACTCGTACCTGAAAAGATTCATTGATCATGATCAGCTCTCTTTAAAACCCCTAAAACATTCAAATATTCCTTCATCATCTTCATATTAATTTTGACCCTGAAACCAGCCAAAGATCAAGATGAAGTTATACGGGAA...

CDS

Download CDS FASTA

1620 bp · TkA07G048460|TK1151|CDS

ATGAAGTTATACGGGAAAAATGGAAGGTTTATGATGTTCTTGGCCATTTTAATGGCGTTTTCTTGGAAAAGTGTGGGAGCGTTGACATGTGAACCTCAATATGGGTTCTTGCCATGCACAAGTGCGCCATGGGGAAGCCTTTTCTTGATCGTGGTTTATCAGTATTTGATGTCTGTGGGTCAAAGCTATATTTCAAACGGTTCGGATATGTTTTTCAGCATAATTGGACCGGGTATTTTTGGTGCTAGTTTGTTCCACAT...

Protein

Download Protein FASTA

539 aa · TkA07G048460|TK1151|PROTEIN

MKLYGKNGRFMMFLAILMAFSWKSVGALTCEPQYGFLPCTSAPWGSLFLIVVYQYLMSVGQSYISNGSDMFFSIIGPGIFGASLFHILANVPMLFLILEMGLSSDDQGASFNAAMGMNVLAGSAVMSLTLIWPSVIAFGSYDLADDDDTISPQSLEEPSFLKKLTAYGITTDSETSFTATIMLVSMIPFLILQLPKIINVESVTHVIELITLIISVAFFVANAIYQIFRPMIQNRRFDYVRQKFVKNKLLKLLSTNGKAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G048460
TK1151 IDTkA07G048460
OH-1004 IDLXL04_037710
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)36.200
Protein coverage (%)TK1151 94.620 / OH-1004 89.446
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G048460
LocationChr07:12874742-12878560 (+)
DescriptionSimilar to NCL: Sodium/calcium exchanger NCL
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g53210 Possesses sodium/calcium exchanger (NCX) activity when expressed in a heterologous mammalian CHO-K1 cell system. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0247800 May function as a sodium/calcium exchanger (NCX) and participate in the maintenance of calcium homeostasis. No verified direct reference in this release
Os01g0212400 May function as a sodium/calcium exchanger (NCX) and participate in the maintenance of calcium homeostasis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037710 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006814 sodium ion transport Biological Process
GO:0006874 intracellular calcium ion homeostasis Biological Process
GO:0055074 calcium ion homeostasis Biological Process
GO:0070588 calcium ion transmembrane transport Biological Process
GO:0071472 cellular response to salt stress Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009705 plant-type vacuole membrane Cellular Component
KEGG gene cross-reference
ath:AT1G53210
ath:AT1G55720
dosa:Os01g0212400
dosa:Os02g0247800
osa:4325568
osa:4328874
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.591
Rank 1 · TkA07G048460 · TK1151
Lysosome / Vacuole0.206
Rank 2 · TkA07G048460 · TK1151
Endoplasmic reticulum0.132
Rank 3 · TkA07G048460 · TK1151
Cytoplasm0.091
Rank 4 · TkA07G048460 · TK1151
Golgi apparatus0.056
Rank 5 · TkA07G048460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01699Na_Ca_ex46-225 aa
PF28566MEX1_N86-98 aa
PF13405EF-hand_6138-153 aa
PF28566MEX1_N175-199 aa
PF23564EF-hand_FSTL1236-288 aa
PF10591SPARC_Ca_bdg247-325 aa
PF30624EF_SSP120259-283 aa
PF13499EF-hand_7264-328 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G048460PF01699Na_Ca_ex462252.4e-0525.1
TkA07G048460PF28566MEX1_N86980.09413.1
TkA07G048460PF13405EF-hand_61381531.2e-0525.3
TkA07G048460PF28566MEX1_N1751990.09413.1
TkA07G048460PF23564EF-hand_FSTL12362880.003518.4
TkA07G048460PF10591SPARC_Ca_bdg2473250.1613.0
TkA07G048460PF30624EF_SSP1202592830.05114.9
TkA07G048460PF13499EF-hand_72643281.1e-0939.2
TkA07G048460PF00036EF-hand_12642881.3e-0628.2
TkA07G048460PF13405EF-hand_62642881.2e-0525.3
TkA07G048460PF13202EF-hand_52712880.0006519.8
TkA07G048460PF30624EF_SSP1202733250.05114.9
TkA07G048460PF23564EF-hand_FSTL12963310.003518.4
TkA07G048460PF00036EF-hand_13043291.3e-0628.2
TkA07G048460PF13405EF-hand_63053291.2e-0525.3
TkA07G048460PF13202EF-hand_53073260.0006519.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L636Arabidopsis thalianasp|Q8L636|NCL_ARATH Sodium/calcium exchanger NCL37.300%Swiss-ProtMedium
Q6K3R5Oryza sativa subsp. japonicasp|Q6K3R5|NCL2_ORYSJ Sodium/calcium exchanger NCL239.400%Swiss-ProtMedium
Q5QNI2Oryza sativa subsp. japonicasp|Q5QNI2|NCL1_ORYSJ Sodium/calcium exchanger NCL136.300%Swiss-ProtMedium

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