TkA07G037860 | RubberDandelionOmics

Gene overview

TkA07G037860

Reference: TK1151 Chr: Chr07 Coordinates: 10047877-10048281 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

405 bp · TkA07G037860|TK1151|cDNA

ATGCATCCAGTAAATTTGCATGTAAATCAAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAGTCAAGATTTTTTGAGAACTCATATATTCCCGAGAACCCGAGAACTCCCAAACCGTTAACTTTTTCGAAAAACCGACTTCGGGGGGCTAAAAATCGCTCAAATATAAGCCCGGTCGC...

CDS

Download CDS FASTA

405 bp · TkA07G037860|TK1151|CDS

ATGCATCCAGTAAATTTGCATGTAAATCAAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAGTCAAGATTTTTTGAGAACTCATATATTCCCGAGAACCCGAGAACTCCCAAACCGTTAACTTTTTCGAAAAACCGACTTCGGGGGGCTAAAAATCGCTCAAATATAAGCCCGGTCGC...

Protein

Download Protein FASTA

134 aa · TkA07G037860|TK1151|PROTEIN

MHPVNLHVNQVYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIESRFFENSYIPENPRTPKPLTFSKNRLRGAKNRSNISPVAKKNFRKNDFFFSKNFAYVQTFFLCICAQFFVLFQNRSKTRNVFKFFL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G037860`
TK1151 ID	TkA07G037860
OH-1004 ID	LXL04_021744
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	96.500
Protein coverage (%)	TK1151 64.179 / OH-1004 18.415 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G037860`
Location	Chr07:10047877-10048281 (-)
Description	Similar to CLPX1: CLP protease regulatory subunit CLPX1, mitochondrial
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_021744` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0051301 cell division Biological Process GO:0051603 proteolysis involved in protein catabolic process Biological Process GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0009376 HslUV protease complex Cellular Component GO:0009507 chloroplast Cellular Component GO:0005524 ATP binding Molecular Function GO:0008233 peptidase activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function GO:0046983 protein dimerization activity Molecular Function GO:0051082 unfolded protein binding Molecular Function
KEGG gene cross-reference	ath:AT1G33360 ath:AT5G53350 lre:Lreu_0653 nse:NSE_0753 ppe:PEPE_1141 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.406

Rank 1 · TkA07G037860 · TK1151

Nucleus0.255

Rank 2 · TkA07G037860 · TK1151

Extracellular0.155

Rank 3 · TkA07G037860 · TK1151

Mitochondrion0.124

Rank 4 · TkA07G037860 · TK1151

Endoplasmic reticulum0.065

Rank 5 · TkA07G037860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06398Pex24p12-119 aa

PF00689Cation_ATPase_C31-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G037860	`PF06398`	Pex24p	12	119	0.1	12.3
TkA07G037860	`PF00689`	Cation_ATPase_C	31	131	0.014	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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