TkA07G033390 | RubberDandelionOmics

Gene overview

TkA07G033390

Reference: TK1151 Chr: Chr07 Coordinates: 8888488-8889686 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

719 bp · TkA07G033390|TK1151|cDNA

GAAAATTCTCATCGTCGGATCATCCTCCATTGCAGCTTCAGAGATTCTCAAAACACATGATCATGTTCTTTCGGGTAGAGACGTATCAAGATTGCTTCAAGGCAACAAATCAACTGTTCATAATATGAATCGTGTATTTACATCAGAAACGGATGATGGTTGGAGGAAAATTCGGAATCTCCATAAATCTAGTATCTTTTAAAGCAAAGCTATGGAGGTTCGTGCGGCCATGAGAGAGAAGAAAGTGATGGAGATGATGA...

CDS

Download CDS FASTA

489 bp · TkA07G033390|TK1151|CDS

ATGGAGGTTCGTGCGGCCATGAGAGAGAAGAAAGTGATGGAGATGATGAAGTACATCGCGTCAAAAAGTGTAGATTTCGAAGGGAAGGGGATTGGAGCAGGGATTAAAGACTCGGTCCGAAGACTTGCTTTGTTGGGAACGAAGCCACAATTAGCAGACTTGTATCCTGTATTTAGTCGATGGGATATACAAGGATGGGGTAAGAAGTTCATGCACATCGTAGAACAGGAGCTTGGAACTATTTGGGAGGATATACTTCA...

Protein

Download Protein FASTA

162 aa · TkA07G033390|TK1151|PROTEIN

MEVRAAMREKKVMEMMKYIASKSVDFEGKGIGAGIKDSVRRLALLGTKPQLADLYPVFSRWDIQGWGKKFMHIVEQELGTIWEDILHKKRNQSKNISSDMKDFTDILIENRFTHHQINALMQELFSAGTESMSFTTEWFAAELLRNNEVMQKARDEVMSTIC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G033390`
TK1151 ID	TkA07G033390
OH-1004 ID	LXL04_035814
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	61.200
Protein coverage (%)	TK1151 99.383 / OH-1004 37.103 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G033390`
Location	Chr07:8888488-8889686 (-)
Description	Similar to CYP80B3: (S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035814` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002238 response to molecule of fungal origin Biological Process GO:0009820 alkaloid metabolic process Biological Process GO:0033075 isoquinoline alkaloid biosynthetic process Biological Process GO:0044550 secondary metabolite biosynthetic process Biological Process GO:1901012 (S)-reticuline biosynthetic process Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0004497 monooxygenase activity Molecular Function GO:0005506 iron ion binding Molecular Function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function GO:0020037 heme binding Molecular Function GO:0050593 N-methylcoclaurine 3'-monooxygenase activity Molecular Function
KEGG gene cross-reference	ag:AAC39452 ag:ABD39696 ag:BAF80448 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.902

Rank 1 · TkA07G033390 · TK1151

Cytoplasm0.053

Rank 2 · TkA07G033390 · TK1151

Cell membrane0.038

Rank 3 · TkA07G033390 · TK1151

Nucleus0.024

Rank 4 · TkA07G033390 · TK1151

Mitochondrion0.024

Rank 5 · TkA07G033390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067p45035-161 aa

PF11517Nab271-152 aa

PF01416PseudoU_synth_1107-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G033390	`PF00067`	p450	35	161	3e-14	53.4
TkA07G033390	`PF11517`	Nab2	71	152	0.09	13.8
TkA07G033390	`PF01416`	PseudoU_synth_1	107	133	0.16	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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