TkA07G029890 | RubberDandelionOmics

Gene overview

TkA07G029890

Reference: TK1151 Chr: Chr07 Coordinates: 7997046-7998609 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1481 bp · TkA07G029890|TK1151|cDNA

TGATCATCTCCCTCCACCCAATACCCTCTCATCCACATTCCAAATTTCCCACACATACACAATCCACCATACATACAAAGATAAGATTTCTATCAAGAAACAAGACCTCTTCACGTACACCCTACCTCCATTGTTGATTTCTCGAGAACCCTAATCGGAAATCATGTCTTGCTCGAATCTAACAATGTGGGTGTCTTCAAAACCATCGCTCGATTCATCTACCCTGTCCTTCAGATCCTTCATCAGCCCAGTTCAAATCC...

CDS

Download CDS FASTA

1119 bp · TkA07G029890|TK1151|CDS

ATGTCTTGCTCGAATCTAACAATGTGGGTGTCTTCAAAACCATCGCTCGATTCATCTACCCTGTCCTTCAGATCCTTCATCAGCCCAGTTCAAATCCCTAATTCGAACCCCTCAGTTTCGAATTCCAGACCTTCTTCCTCGATCAATTGCAGTCTCAGGGAGCTTCGAAATCGTATAGATTCAGTGAAGAACACCCAGAAGATCACTGAAGCAATGAAGCTTGTTGCAGCTGCGAAGGTGAGAAGAGCACAGGAAGCGGT...

Protein

Download Protein FASTA

372 aa · TkA07G029890|TK1151|PROTEIN

MSCSNLTMWVSSKPSLDSSTLSFRSFISPVQIPNSNPSVSNSRPSSSINCSLRELRNRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNARPFSETLVEVLYSINEQLQTEDVDVPLTSVRPVKKVALVVVTGDRGLCGGFNNMILKKAVQRINELKTLGLDYVVISVGKKGNTYFSRRPNIPVDKFLDGTNLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSNPVIHTLLPLSPKGEICDINGTCVDAAED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G029890`
TK1151 ID	TkA07G029890
OH-1004 ID	LXL04_031180
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	71.800
Protein coverage (%)	TK1151 87.634 / OH-1004 87.634 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G029890

Location Chr07:7997046-7998609 (-)

Description Similar to ATPC: ATP synthase gamma chain, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g04640`	Produces ATP from ADP in the presence of a proton gradient across the membrane.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031180 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006754 ATP biosynthetic process Biological Process

GO:0009772 photosynthetic electron transport in photosystem II Biological Process

GO:0015986 proton motive force-driven ATP synthesis Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0045259 proton-transporting ATP synthase complex Cellular Component

GO:0030234 enzyme regulator activity Molecular Function

GO:0046933 proton-transporting ATP synthase activity, rotational mechanism Molecular Function

KEGG gene cross-reference

ath:AT4G04640

nta:107813955

zma:100284505

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982

Rank 1 · TkA07G029890 · TK1151

Mitochondrion0.031

Rank 2 · TkA07G029890 · TK1151

Cytoplasm0.017

Rank 3 · TkA07G029890 · TK1151

Peroxisome0.013

Rank 4 · TkA07G029890 · TK1151

Nucleus0.013

Rank 5 · TkA07G029890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00231ATP-synt51-371 aa

PF02734Dak259-112 aa

PF21205Rep3_C140-171 aa

PF02734Dak2299-350 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G029890	`PF00231`	ATP-synt	51	371	1.7e-93	314.2
TkA07G029890	`PF02734`	Dak2	59	112	0.32	11.6
TkA07G029890	`PF21205`	Rep3_C	140	171	0.083	13.9
TkA07G029890	`PF02734`	Dak2	299	350	0.32	11.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q01908`	Arabidopsis thaliana	sp\|Q01908\|ATPG1_ARATH ATP synthase gamma chain 1, chloroplastic	79.700%	Swiss-Prot	High

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