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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G029570
Reference: TK1151 Chr: Chr07 Coordinates: 7905756-7907917 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

450 bp · TkA07G029570|TK1151|cDNA

ATGCCTAAAAGCATTTCTGTTCGTTCCAAGGGTTATATGAAATCGATTCCTTCTCAACGACCAGCTCGCCAGCAAGTTACAACAACTCCATTAGGTCAATCACAACGCATTCGTGTGCCTGGGGAGAAGAAAGCAGGGGAGGGATTGGAATTCGAGGTATACAATCAGGGAATGTCAAAGACTGAGCTCTACATCAAAGGTCTGAATGTTGAAGGTGCTGATGTGCAGGGCTCTCGATGGCTGAATATAATCATTGCTTT...

CDS

Download CDS FASTA

450 bp · TkA07G029570|TK1151|CDS

ATGCCTAAAAGCATTTCTGTTCGTTCCAAGGGTTATATGAAATCGATTCCTTCTCAACGACCAGCTCGCCAGCAAGTTACAACAACTCCATTAGGTCAATCACAACGCATTCGTGTGCCTGGGGAGAAGAAAGCAGGGGAGGGATTGGAATTCGAGGTATACAATCAGGGAATGTCAAAGACTGAGCTCTACATCAAAGGTCTGAATGTTGAAGGTGCTGATGTGCAGGGCTCTCGATGGCTGAATATAATCATTGCTTT...

Protein

Download Protein FASTA

149 aa · TkA07G029570|TK1151|PROTEIN

MPKSISVRSKGYMKSIPSQRPARQQVTTTPLGQSQRIRVPGEKKAGEGLEFEVYNQGMSKTELYIKGLNVEGADVQGSRWLNIIIAFFFLVFNIAMLAFDKELKRLVVETTANQIFEALATDPLTATDRDPPGPSHKWINLAQVQSHVG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G029570
TK1151 IDTkA07G029570
OH-1004 IDLXL04_019532
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)79.400
Protein coverage (%)TK1151 77.852 / OH-1004 98.485
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G029570
LocationChr07:7905756-7907917 (+)
DescriptionSimilar to Os05g0576300: Zinc finger CCCH domain-containing protein 39
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019532 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0051511 negative regulation of unidimensional cell growth Biological Process
GO:1901347 negative regulation of secondary cell wall biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G66810
ath:AT1G68200
dosa:Os01g0645000
dosa:Os05g0576300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.319
Rank 1 · TkA07G029570 · TK1151
Cytoplasm0.299
Rank 2 · TkA07G029570 · TK1151
Mitochondrion0.190
Rank 3 · TkA07G029570 · TK1151
Cell membrane0.138
Rank 4 · TkA07G029570 · TK1151
Endoplasmic reticulum0.118
Rank 5 · TkA07G029570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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