TkA07G022100 | RubberDandelionOmics

Gene overview

TkA07G022100

Reference: TK1151 Chr: Chr07 Coordinates: 6003688-6004815 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

803 bp · TkA07G022100|TK1151|cDNA

CTTTTTCATAAATTTACTTTTCGGTCACTGTAATGTTTACATTCTTTTGAAAATAAATATTGTTTGTAAAAAAACGGTTGAGCAGAAGTTTCGACGTAAATATAGTGCATGCATGCGTTTGTCTTGAGAATTTATTATGCTCGGATAAAGAAAATATGTATATGAAGGTGATCAACCATGGAATACCTACTTCAATCATGAAAGATGCAATAGACTCCGCTGAAGAATTCTTTAATCTACCAAGTGACAAGAAGATGTGT...

CDS

Download CDS FASTA

648 bp · TkA07G022100|TK1151|CDS

ATGTATATGAAGGTGATCAACCATGGAATACCTACTTCAATCATGAAAGATGCAATAGACTCCGCTGAAGAATTCTTTAATCTACCAAGTGACAAGAAGATGTGTTTTGCTTCTACCGATGTTCATAAGCCCGTGAGATATGGCACTAGTATGAATCATGGGCTAGATAAAGTGTTATATTGGAGAGACTTCATCAAGCACTATGCCAATCCGATATCAGAATGGATCCATTTATGGCCATCGGATCCTCCAAGTTACAA...

Protein

Download Protein FASTA

216 aa · TkA07G022100|TK1151|PROTEIN

MYMKVINHGIPTSIMKDAIDSAEEFFNLPSDKKMCFASTDVHKPVRYGTSMNHGLDKVLYWRDFIKHYANPISEWIHLWPSDPPSYKEKMGSYAKAVHILQKKLMEVVLETLGLNANYLDDDIEEGSQVMAVNCYPSCPEPDLALGMPPHTDYGTLTILNQSHQGLEIFYHEKWHAVPFVEGALIVQLGDQFEVMSNGIYKSIPHRAIVNLHTKRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G022100`
TK1151 ID	TkA07G022100
OH-1004 ID	LXL04_022101
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	43.100
Protein coverage (%)	TK1151 99.537 / OH-1004 60.795 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G022100

Location Chr07:6003688-6004815 (-)

Description Similar to SLC1: Probable 2-oxoglutarate-dependent dioxygenase SLC1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24530`	Converts salicylic acid (SA) to 2,3-dihydroxybenzoic acid (2,3-DHBA) (By similarity).	Identification of arabidopsis loci required for susceptibility to the downy mildew pathogen Hyaloperonospora parasitica.2005 · DOI: 10.1094/mpmi-18-0583 Arabidopsis DMR6 encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.2008 · DOI: 10.1111/j.1365-313x.2008.03427.x DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.2015 · DOI: 10.1111/tpj.12719

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0667400`	Involved in melatonin degradation.	No verified direct reference in this release
`Os04g0667200`	Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R-dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants.	No verified direct reference in this release
`Os08g0560000`	Involved in the regulation of shoot development and salicylic acid (SA) homeostasis.	No verified direct reference in this release
`Os10g0536400`	Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R- dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants.	Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.2008 · DOI: 10.1016/s1016-8478(23)17587-x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022101 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0002239 response to oomycetes Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010150 leaf senescence Biological Process

GO:0046244 salicylic acid catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G10490

ath:AT4G10500

dosa:Os08g0560000

dosa:Os09g0570800

osa:4346321

osa:4347916

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.747

Rank 1 · TkA07G022100 · TK1151

Nucleus0.224

Rank 2 · TkA07G022100 · TK1151

Peroxisome0.079

Rank 3 · TkA07G022100 · TK1151

Endoplasmic reticulum0.056

Rank 4 · TkA07G022100 · TK1151

Mitochondrion0.052

Rank 5 · TkA07G022100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226DIOX_N4-81 aa

PF031712OG-FeII_Oxy128-215 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G022100	`PF14226`	DIOX_N	4	81	6.9e-13	50.0
TkA07G022100	`PF03171`	2OG-FeII_Oxy	128	215	5.6e-25	88.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLV0`	Arabidopsis thaliana	sp\|Q9FLV0\|DMR6_ARATH Protein DOWNY MILDEW RESISTANCE 6	40.100%	Swiss-Prot	Medium
`Q7XR83`	Oryza sativa subsp. japonica	sp\|Q7XR83\|ODD21_ORYSJ 2-oxoglutarate-dependent dioxygenase 21, chloroplastic	46.500%	Swiss-Prot	Medium
`Q7XR84`	Oryza sativa subsp. japonica	sp\|Q7XR84\|FL3H3_ORYSJ Flavanone 3-dioxygenase 3	44.200%	Swiss-Prot	Medium
`Q6YYX9`	Oryza sativa subsp. japonica	sp\|Q6YYX9\|SLC1_ORYSJ Probable 2-oxoglutarate-dependent dioxygenase SLC1	40.300%	Swiss-Prot	Medium
`Q8W2X5`	Oryza sativa subsp. japonica	sp\|Q8W2X5\|FL3H2_ORYSJ Flavanone 3-dioxygenase 2	40.600%	Swiss-Prot	Medium

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