TkA07G020010 | RubberDandelionOmics

Gene overview

TkA07G020010

Reference: TK1151 Chr: Chr07 Coordinates: 5409652-5412739 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2140 bp · TkA07G020010|TK1151|cDNA

CTCACATCATGTCCAATAAGTTGACTCAAAAGTTAGCCACTAATGGTCGTTTAATGGCTGCTTTTAAGCTCCTTTCGGTAGTCCACCTCCGACTTCTTACCTTTCTTTGGATTTTATAGCTTTCAGACCTACACACAACCTGTGCATATTCGCTGTATATTCATCGGTCATCGATTCCATTCACGAATTACAATCAACTGTTTGTTTAACTATAACAAATTCAATCTCACACGATCATCGGTTTTTGATCGGAGCTTCAT...

CDS

Download CDS FASTA

1413 bp · TkA07G020010|TK1151|CDS

ATGTCTCCCAAGAATAATTTCTCTCTTCAATCGGACAATTATTTTCACAGACTTTCAAAGGCTTTAGAGTTTGCATTTTCCGAATGGATACTCATGTTTCTACTGTTCATTGATTCATGTTTCGCTTACTTAATCGCAAAATTCGCATCCTACTGTCAACTTCAAGGTCCATGTCTACTATGTACAAGATACGATCATCTTCTAGCCAAGGACAAAACAGGAATTTTCTGGGACTCCATTTGTAACCATCAGAAATCCGA...

Protein

Download Protein FASTA

470 aa · TkA07G020010|TK1151|PROTEIN

MSPKNNFSLQSDNYFHRLSKALEFAFSEWILMFLLFIDSCFAYLIAKFASYCQLQGPCLLCTRYDHLLAKDKTGIFWDSICNHQKSDLSSLLFRHVHDKNLRPTSPIHDASDKSLSENNEHSKSEKNIFVDESLKSITSSDLPNIQIDPSSEAEYQKIDVKVNNESELVVSDDEISRDLVPEVHLKSDSPIRTPDLHATFVARDTEELKWQNDGNNEDISLITEQIPLDKAPSSNLSETPVDASLETISPPKTYEPIKDP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G020010`
TK1151 ID	TkA07G020010
OH-1004 ID	LXL04_026945
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 89.354 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G020010

Location Chr07:5409652-5412739 (-)

Description Similar to MYOB1: Myosin-binding protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08800`	Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment.	Identification of myosin XI receptors in Arabidopsis defines a distinct class of transport vesicles.2013 · DOI: 10.1105/tpc.113.113704
`At5g16720`	Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment.	No verified direct reference in this release
`At1g74830`	Probable membrane-anchored myosin receptors.	No verified direct reference in this release
`At1g18990`	Probable membrane-anchored myosin receptors.	No verified direct reference in this release
`At2g30690`	Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026945 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0016020 membrane Cellular Component

GO:0030133 transport vesicle Cellular Component

GO:0017022 myosin binding Molecular Function

GO:0080115 myosin XI tail binding Molecular Function

KEGG gene cross-reference

ath:AT1G08800

ath:AT2G30690

ath:AT5G16720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.410

Rank 1 · TkA07G020010 · TK1151

Nucleus0.260

Rank 2 · TkA07G020010 · TK1151

Golgi apparatus0.157

Rank 3 · TkA07G020010 · TK1151

Endoplasmic reticulum0.146

Rank 4 · TkA07G020010 · TK1151

Cell membrane0.143

Rank 5 · TkA07G020010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10046BLOC1_2307-325 aa

PF04576Zein-binding366-454 aa

PF10046BLOC1_2390-467 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G020010	`PF10046`	BLOC1_2	307	325	7.2	7.8
TkA07G020010	`PF04576`	Zein-binding	366	454	2e-29	102.5
TkA07G020010	`PF10046`	BLOC1_2	390	467	7.2	7.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4HXQ7`	Arabidopsis thaliana	sp\|F4HXQ7\|MYOB1_ARATH Myosin-binding protein 1	48.000%	Swiss-Prot	Low
`Q0WNW4`	Arabidopsis thaliana	sp\|Q0WNW4\|MYOB3_ARATH Myosin-binding protein 3	29.300%	Swiss-Prot	Low
`F4HVS6`	Arabidopsis thaliana	sp\|F4HVS6\|MYOB6_ARATH Probable myosin-binding protein 6	28.000%	Swiss-Prot	Low
`Q9LMC8`	Arabidopsis thaliana	sp\|Q9LMC8\|MYOB5_ARATH Probable myosin-binding protein 5	28.100%	Swiss-Prot	Low
`F4INW9`	Arabidopsis thaliana	sp\|F4INW9\|MYOB4_ARATH Probable myosin-binding protein 4	69.000%	Swiss-Prot	Low

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