TkA07G019460 | RubberDandelionOmics

Gene overview

TkA07G019460

Reference: TK1151 Chr: Chr07 Coordinates: 5261482-5265551 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1723 bp · TkA07G019460|TK1151|cDNA

ATGGAGTAAAAGTATTCCTCGTCAACTTGCGAGTTAGCCACTTTAAAGGAAAGACGCAGCCAAAACCTCGCCTCTCTCTCTCTCTATAAATACTTCAATTCTTCGATATGCTCCCACCAGTGGCTCACGATTTGACGGATCTTCTCACCATGACAGATAACGAAGATCCAAGAGCTATAAACAACGGAACCCAATCACCATCACGTACAAACCTCAAAAGATGGCATTGGTGGATTCTAGTAATCGTCAACATATGTTTC...

CDS

Download CDS FASTA

1191 bp · TkA07G019460|TK1151|CDS

ATGCTCCCACCAGTGGCTCACGATTTGACGGATCTTCTCACCATGACAGATAACGAAGATCCAAGAGCTATAAACAACGGAACCCAATCACCATCACGTACAAACCTCAAAAGATGGCATTGGTGGATTCTAGTAATCGTCAACATATGTTTCCTCCTAATTGGTCAAGTAGTCGCAGTAATTCTAGGTCGATTTTACTACGATCAAGGCGGAAATAGCAAATGGCTAGCAACCTTAATTCAAACAATCGGATTCCCAAT...

Protein

Download Protein FASTA

396 aa · TkA07G019460|TK1151|PROTEIN

MLPPVAHDLTDLLTMTDNEDPRAINNGTQSPSRTNLKRWHWWILVIVNICFLLIGQVVAVILGRFYYDQGGNSKWLATLIQTIGFPILLIPYIIFPSNNQKQPSTTTTSVSLPILSLIYMIVGALIAGDNMLYSIGLLYLSASTYSLICATQLAFNAVFSFFINSQKFTALIFNSVVVLTLSASLLAVNDDSDKPTGVTSKKYALGFIATLSASALYAFLLSIMQLSFQKVLKRETFSVVLELQIYTSFVATCVSAIGLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G019460`
TK1151 ID	TkA07G019460
OH-1004 ID	LXL04_026941
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 93.939 / OH-1004 97.128 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G019460

Location Chr07:5261482-5265551 (-)

Description Similar to PUP11: Probable purine permease 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g44750`	Probable purine permease 11.	No verified direct reference in this release
`At4g08700`	Probable purine permease 13.	No verified direct reference in this release
`At5g41160`	Putative purine permease 12.	No verified direct reference in this release
`At4g18210`	Probable purine permease 10.	No verified direct reference in this release
`At4g18220`	Purine permease 21.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026941 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006863 purine nucleobase transport Biological Process

GO:0009624 response to nematode Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005345 purine nucleobase transmembrane transporter activity Molecular Function

GO:0015211 purine nucleoside transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G44750

ath:AT4G08700

ath:AT4G18210

ath:AT4G18220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.377

Rank 1 · TkA07G019460 · TK1151

Lysosome / Vacuole0.306

Rank 2 · TkA07G019460 · TK1151

Endoplasmic reticulum0.174

Rank 3 · TkA07G019460 · TK1151

Golgi apparatus0.095

Rank 4 · TkA07G019460 · TK1151

Cytoplasm0.080

Rank 5 · TkA07G019460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09307MHC2-interact10-71 aa

PF16913PUNUT43-363 aa

PF09307MHC2-interact145-167 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G019460	`PF09307`	MHC2-interact	10	71	0.29	11.7
TkA07G019460	`PF16913`	PUNUT	43	363	1.5e-129	432.6
TkA07G019460	`PF09307`	MHC2-interact	145	167	0.29	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LPF6`	Arabidopsis thaliana	sp\|Q9LPF6\|PUP11_ARATH Probable purine permease 11	69.500%	Swiss-Prot	High
`Q8RY83`	Arabidopsis thaliana	sp\|Q8RY83\|PUP13_ARATH Probable purine permease 13	58.000%	Swiss-Prot	High
`Q9FLL4`	Arabidopsis thaliana	sp\|Q9FLL4\|PUP12_ARATH Putative purine permease 12	55.600%	Swiss-Prot	High
`O49725`	Arabidopsis thaliana	sp\|O49725\|PUP10_ARATH Probable purine permease 10	53.200%	Swiss-Prot	High
`O49726`	Arabidopsis thaliana	sp\|O49726\|PUP21_ARATH Purine permease 21	49.400%	Swiss-Prot	Medium

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