TkA07G018860 | RubberDandelionOmics

Gene overview

TkA07G018860

Reference: TK1151 Chr: Chr07 Coordinates: 5072319-5079457 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1726 bp · TkA07G018860|TK1151|cDNA

AAAAGAAGTGAAGAGTTGAGATCATCAATGGCAGCCACACCTGGACTTCTCACAGACTGGCCATGGAAACCACTTGGAAGCTTTAAGTACGTGTTATTGCTCCCGTGGGTGGTGAAGAGCAGTTATGAATTCGTGACCGCTGATAAGAAAGACATAATGTCGGCCTTAATTTTTCCGTTTCTTTTAACAAGAATGATTGGTAATCAGATCTGGATTTCTTTGAACCGCTACATAACCGCGAAAGGCAAAAACCGGATCGT...

CDS

Download CDS FASTA

1863 bp · TkA07G018860|TK1151|CDS

ATGGCAGCCACACCTGGACTTCTCACAGACTGGCCATGGAAACCACTTGGAAGCTTTAAGTACGTGTTATTGCTCCCGTGGGTGGTGAAGAGCAGTTATGAATTCGTGACCGCTGATAAGAAAGACATAATGTCGGCCTTAATTTTTCCGTTTCTTTTAACAAGAATGATTGGTAATCAGATCTGGATTTCTTTGAACCGCTACATAACCGCGAAAGGCAAAAACCGGATCGTTAACAAGACTATTGAATTCGAGCAAGT...

Protein

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620 aa · TkA07G018860|TK1151|PROTEIN

MAATPGLLTDWPWKPLGSFKYVLLLPWVVKSSYEFVTADKKDIMSALIFPFLLTRMIGNQIWISLNRYITAKGKNRIVNKTIEFEQVDRESDWDDQIIFNGLLYYFGNYYFEGAKYIPWWRSDGVIIVILLHAMVVEFLYYWLHRALHHHFLYNRYHSHHHSSIVTEPITSVIHPFAEHIAYFALFAIPLMTTVLSGTASIATFSGYISYVDIMNNMGHCNFEFIPKSLFNIFPPLKYIIYTPSYHSLHHTQFRTNYSLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G018860`
TK1151 ID	TkA07G018860
OH-1004 ID	LXL04_026933
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G018860

Location Chr07:5072319-5079457 (+)

Description Similar to GL1-5: Very-long-chain aldehyde decarbonylase GL1-5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g02205`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	Overexpression of Arabidopsis ECERIFERUM1 promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stresses.2011 · DOI: 10.1104/pp.111.172320 Reconstitution of plant alkane biosynthesis in yeast demonstrates that Arabidopsis ECERIFERUM1 and ECERIFERUM3 are core components of a very-long-chain alkane synthesis complex.2012 · DOI: 10.1105/tpc.112.099796 Molecular characterization of the CER1 gene of arabidopsis involved in epicuticular wax biosynthesis and pollen fertility.1995 · DOI: 10.1105/tpc.7.12.2115
`At1g02190`	Protein CER1-like 1.	No verified direct reference in this release
`At2g37700`	Protein CER1-like 2.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8BHF1`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	No verified direct reference in this release
`Os10g0471100`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development.2006 · DOI: 10.1105/tpc.106.042044
`UniProt: B8AFI3`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026933 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008610 lipid biosynthetic process Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0010143 cutin biosynthetic process Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0043447 alkane biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT1G02205

dosa:Os02g0621300

dosa:Os10g0471100

osa:4330012

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.628

Rank 1 · TkA07G018860 · TK1151

Mitochondrion0.118

Rank 2 · TkA07G018860 · TK1151

Cytoplasm0.093

Rank 3 · TkA07G018860 · TK1151

Nucleus0.092

Rank 4 · TkA07G018860 · TK1151

Golgi apparatus0.053

Rank 5 · TkA07G018860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04116FA_hydroxylase130-270 aa

PF12076CER1-like_C450-614 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G018860	`PF04116`	FA_hydroxylase	130	270	1.7e-22	81.0
TkA07G018860	`PF12076`	CER1-like_C	450	614	2.8e-69	232.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HVY0`	Arabidopsis thaliana	sp\|F4HVY0\|CER1_ARATH Very-long-chain aldehyde decarbonylase CER1	57.000%	Swiss-Prot	High
`F4HVX7`	Arabidopsis thaliana	sp\|F4HVX7\|CERL1_ARATH Protein CER1-like 1	53.100%	Swiss-Prot	High
`F4IR05`	Arabidopsis thaliana	sp\|F4IR05\|CERL2_ARATH Protein CER1-like 2	41.600%	Swiss-Prot	Medium
`B8BHF1`	Oryza sativa subsp. indica	sp\|B8BHF1\|GLO15_ORYSI Very-long-chain aldehyde decarbonylase GL1-5	53.900%	Swiss-Prot	High
`Q7XDI3`	Oryza sativa subsp. japonica	sp\|Q7XDI3\|GLO15_ORYSJ Very-long-chain aldehyde decarbonylase GL1-5	54.800%	Swiss-Prot	High
`B8AFI3`	Oryza sativa subsp. indica	sp\|B8AFI3\|GLO14_ORYSI Very-long-chain aldehyde decarbonylase GL1-4	52.800%	Swiss-Prot	High

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