TkA07G015880 | RubberDandelionOmics

Gene overview

TkA07G015880

Reference: TK1151 Chr: Chr07 Coordinates: 4349701-4352501 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1741 bp · TkA07G015880|TK1151|cDNA

TATCAGGAACATGCACGTTCATAACGTTACCAAACTTCGAGACCTCGATCCGCAAAACTTGATTTCATTATCAATGGTGATGTTATTCAAGCCACGCTGTCTAAGAACCTATTCTACAAATTCCAGACGCAACTGCGAGAAGGTTCTGATTATCTGATTGCATCACCTACACTTGGAGAGCAAAATATAAATTTCTTACCCTGCCAGCAAAAAAAAAACAAAATTACTTTCCTCAAAACAACAATTCTTATCAATTCACC...

CDS

Download CDS FASTA

666 bp · TkA07G015880|TK1151|CDS

ATGGTATTTGAATGTAAGAACAGGAGGTGCCTAAAACTGAATAAATCCTATTCCAAGAGGTTTAAAATTCCAGTGGTTGTTCAAGATTCTAATGGTAGCATAGTGTTAACACTTTTCGACCGTGATGCAACAATGTCTTTGGTTCAACACTCATGCAAAGCATTGGTTGAAAAGATAAACCGACTTGAGTTTAATTTAGCTCTGTTTCCTGATGAGCTAAATGTTTTGAAAAATCTACATTTAGCATTCAAAGTTGTTTC...

Protein

Download Protein FASTA

221 aa · TkA07G015880|TK1151|PROTEIN

MVFECKNRRCLKLNKSYSKRFKIPVVVQDSNGSIVLTLFDRDATMSLVQHSCKALVEKINRLEFNLALFPDELNVLKNLHLAFKVVSGQYNVTNQNTQYSILKVSNDIELIKELTQNSICRFFGIYYFSILHKVPCHSESVQNIIARDDISQSVGENITPSSVTKSASYLNEMPSTSSTMKRKLDEVIDVDDTTQSSTTKTRHLDGVDGVGIKLLIPKVEK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G015880`
TK1151 ID	TkA07G015880
OH-1004 ID	LXL04_026895
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	89.100
Protein coverage (%)	TK1151 100.000 / OH-1004 53.580 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G015880`
Location	Chr07:4349701-4352501 (+)
Description	No functional description available
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026895` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0007004 telomere maintenance via telomerase Biological Process GO:0007140 male meiotic nuclear division Biological Process GO:0009555 pollen development Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0005662 DNA replication factor A complex Cellular Component GO:0003684 damaged DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0043047 single-stranded telomeric DNA binding Molecular Function
KEGG gene cross-reference	dosa:Os02g0776800 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.968

Rank 1 · TkA07G015880 · TK1151

Cytoplasm0.110

Rank 2 · TkA07G015880 · TK1151

Cell membrane0.016

Rank 3 · TkA07G015880 · TK1151

Mitochondrion0.012

Rank 4 · TkA07G015880 · TK1151

Endoplasmic reticulum0.008

Rank 5 · TkA07G015880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08646Rep_fac-A_C9-104 aa

PF06416T3SS_NleG25-52 aa

PF06416T3SS_NleG81-129 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G015880	`PF08646`	Rep_fac-A_C	9	104	0.013	16.0
TkA07G015880	`PF06416`	T3SS_NleG	25	52	0.054	14.1
TkA07G015880	`PF06416`	T3SS_NleG	81	129	0.054	14.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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