TkA07G015250 | RubberDandelionOmics

Gene overview

TkA07G015250

Reference: TK1151 Chr: Chr07 Coordinates: 4142537-4143124 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

434 bp · TkA07G015250|TK1151|cDNA

CACATTTTTTTGCAAGATAAAGCAACTACTGGAAAACAAGGACTTGGTATCAAGGACCGACCAAGGAAAGTAGCCGGAGTGGGATTTCAAGGGACTAAAATGTCATTTAGCGATAGTGAGAAGGAGGAATATGAATCGGAAGAAGACATTCCTCTAAAAAAACCAAAAATTGATAATGTTTCAGAGTTAAAAGTGAAGCTGAAGAAACTCTGCAAAAAGCTTCTTAGCCAAGTACCTGAGAAATCATTGAAGCTTAAAAA...

CDS

Download CDS FASTA

405 bp · TkA07G015250|TK1151|CDS

CACATTTTTTTGCAAGATAAAGCAACTACTGGAAAACAAGGACTTGGTATCAAGGACCGACCAAGGAAAGTAGCCGGAGTGGGATTTCAAGGGACTAAAATGTCATTTAGCGATAGTGAGAAGGAGGAATATGAATCGGAAGAAGACATTCCTCTAAAAAAACCAAAAATTGATAATGTTTCAGAGTTAAAAGTGAAGCTGAAGAAACTCTGCAAAAAGCTTCTTAGCCAAGTACCTGAGAAATCATTGAAGCTTAAAAA...

Protein

Download Protein FASTA

134 aa · TkA07G015250|TK1151|PROTEIN

HIFLQDKATTGKQGLGIKDRPRKVAGVGFQGTKMSFSDSEKEEYESEEDIPLKKPKIDNVSELKVKLKKLCKKLLSQVPEKSLKLKKLKVLIDENSSIFSNFSSKKDALEFLKQKLERSKKFTVEGKKVSLSSK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G015250`
TK1151 ID	TkA07G015250
OH-1004 ID	LXL04_026400
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	93.200
Protein coverage (%)	TK1151 98.507 / OH-1004 35.772 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G015250

Location Chr07:4142537-4143124 (-)

Description Similar to GDP1: G-patch domain-containing protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63980`	Involved in ribosome biogenesis, required for normal progression of rRNA processing.	Two Nucleolar Proteins, GDP1 and OLI2, Function As Ribosome Biogenesis Factors and Are Preferentially Involved in Promotion of Leaf Cell Proliferation without Strongly Affecting Leaf Adaxial-Abaxial Patterning in Arabidopsis thaliana .2017 · DOI: 10.3389/fpls.2017.02240

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026400 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006364 rRNA processing Biological Process

GO:0007004 telomere maintenance via telomerase Biological Process

GO:0007080 mitotic metaphase chromosome alignment Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009637 response to blue light Biological Process

GO:0010972 negative regulation of G2/M transition of mitotic cell cycle Biological Process

GO:0031397 negative regulation of protein ubiquitination Biological Process

GO:0031647 regulation of protein stability Biological Process

GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process

GO:0042127 regulation of cell population proliferation Biological Process

GO:0070198 protein localization to chromosome, telomeric region Biological Process

GO:0090069 regulation of ribosome biogenesis Biological Process

KEGG gene cross-reference

ath:AT1G63980

hsa:54984

rno:305963

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.916

Rank 1 · TkA07G015250 · TK1151

Cytoplasm0.177

Rank 2 · TkA07G015250 · TK1151

Mitochondrion0.024

Rank 3 · TkA07G015250 · TK1151

Cell membrane0.021

Rank 4 · TkA07G015250 · TK1151

Extracellular0.017

Rank 5 · TkA07G015250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00443UCH49-118 aa

PF30780DUF873354-111 aa

PF07544Med959-80 aa

PF25879WHD_LYAR64-133 aa

PF27224YfjT79-126 aa

PF07544Med983-122 aa

PF18592Tho1_MOS11_C107-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G015250	`PF00443`	UCH	49	118	0.036	14.4
TkA07G015250	`PF30780`	DUF8733	54	111	0.14	13.4
TkA07G015250	`PF07544`	Med9	59	80	0.06	14.1
TkA07G015250	`PF25879`	WHD_LYAR	64	133	4.6e-21	75.8
TkA07G015250	`PF27224`	YfjT	79	126	0.2	12.8
TkA07G015250	`PF07544`	Med9	83	122	0.06	14.1
TkA07G015250	`PF18592`	Tho1_MOS11_C	107	125	0.037	14.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940M0`	Arabidopsis thaliana	sp\|Q940M0\|GPDP1_ARATH G-patch domain-containing protein 1	45.600%	Swiss-Prot	Medium

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