TkA07G012840 | RubberDandelionOmics

Gene overview

TkA07G012840

Reference: TK1151 Chr: Chr07 Coordinates: 3513445-3515459 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1854 bp · TkA07G012840|TK1151|cDNA

ATGCCCTTACCCTTTGAATTCGAGGGGAAGGGGGTGGTGTGGTTGGAAAACCAGCAAGATTCACAGTTTCTTGTACCTTATGCAAACCCACTTGTACATTTTCAGAATCTCGTGAACAAGAAGAGGAAGTACATCAACGAACCAAGGTCTGTCCTGGATAACATCACCACCAGTCCAAGCCCTCCCGCTTCGACTTCAACCCTGTCTTCTTCTCACGGCGGTGCTGAAACAGCCGGGGTGGCGGCGCTTTCTTCGAAATG...

CDS

Download CDS FASTA

1854 bp · TkA07G012840|TK1151|CDS

ATGCCCTTACCCTTTGAATTCGAGGGGAAGGGGGTGGTGTGGTTGGAAAACCAGCAAGATTCACAGTTTCTTGTACCTTATGCAAACCCACTTGTACATTTTCAGAATCTCGTGAACAAGAAGAGGAAGTACATCAACGAACCAAGGTCTGTCCTGGATAACATCACCACCAGTCCAAGCCCTCCCGCTTCGACTTCAACCCTGTCTTCTTCTCACGGCGGTGCTGAAACAGCCGGGGTGGCGGCGCTTTCTTCGAAATG...

Protein

Download Protein FASTA

617 aa · TkA07G012840|TK1151|PROTEIN

MPLPFEFEGKGVVWLENQQDSQFLVPYANPLVHFQNLVNKKRKYINEPRSVLDNITTSPSPPASTSTLSSSHGGAETAGVAALSSKWPPPENQETSTSNVGGVLDLHHFQQLPLEEKCGGMEDWENGDSGQDQAMLRWIMGDVEDPSMGLNKMLHGNAGGGPADFDFNGGFGVVDQGFIGLDSGNPVGQIGSLSSNPQLPPSPPSPAMFNNHHHQNQIFSPLNETQMLPFDVKPNLFNPQLPFEHQLLMPPQPKRHNPGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G012840`
TK1151 ID	TkA07G012840
OH-1004 ID	LXL04_026867
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.200
Protein coverage (%)	TK1151 99.676 / OH-1004 89.200 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G012840

Location Chr07:3513445-3515459 (+)

Description Similar to SCL6: Scarecrow-like protein 6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00150`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At2g45160`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At3g60630`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At4g36710`	Probable transcription factor involved in plant development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0723000`	Probable transcription factor involved in plant development (By similarity).	Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.2016 · DOI: 10.1105/tpc.16.00018

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026867 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0030154 cell differentiation Biological Process

GO:0048768 root hair cell tip growth Biological Process

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G45160

ath:AT3G60630

ath:AT4G00150

ath:AT4G36710

dosa:Os03g0723000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965

Rank 1 · TkA07G012840 · TK1151

Cytoplasm0.108

Rank 2 · TkA07G012840 · TK1151

Cell membrane0.024

Rank 3 · TkA07G012840 · TK1151

Endoplasmic reticulum0.019

Rank 4 · TkA07G012840 · TK1151

Plastid0.016

Rank 5 · TkA07G012840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03514GRAS268-616 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G012840	`PF03514`	GRAS	268	616	6e-96	322.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81316`	Arabidopsis thaliana	sp\|O81316\|SCL6_ARATH Scarecrow-like protein 6	51.100%	Swiss-Prot	High
`Q7XJM8`	Arabidopsis thaliana	sp\|Q7XJM8\|SCL27_ARATH Scarecrow-like protein 27	51.900%	Swiss-Prot	Medium
`Q9M000`	Arabidopsis thaliana	sp\|Q9M000\|SCL22_ARATH Scarecrow-like protein 22	39.200%	Swiss-Prot	Medium
`O23210`	Arabidopsis thaliana	sp\|O23210\|SCL15_ARATH Scarecrow-like protein 15	38.500%	Swiss-Prot	Medium
`Q53K16`	Oryza sativa subsp. japonica	sp\|Q53K16\|SCL7_ORYSJ SCARECROW-LIKE protein 7	31.500%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card