TkA07G011640 | RubberDandelionOmics

Gene overview

TkA07G011640

Reference: TK1151 Chr: Chr07 Coordinates: 3179648-3180707 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

992 bp · TkA07G011640|TK1151|cDNA

GGCTACGTATTGTACCTGATCATATTCTTTTCTATATATCTCAGTATTCCATCCAACAATTTCTTCTCCTCAATTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTGTCGATTTGTCGTCATCAAACTCGGTGCTCTGTTTTTCACAATCGATAACTCAAGCAACCTCCAAAGTAATCACAGCAATGGAAACACCAAACGATTAGATCATAAGCCATGTCTGTTGCAGACCCATGGCCCTTTTCCTGAACCT...

CDS

Download CDS FASTA

513 bp · TkA07G011640|TK1151|CDS

ATGAAGAAATTCCGAGGCTTTTTAATCAAACATAGAGTCATCTCGCTATTCCGATGCATCCGCCGGAGAACGTCGCCGAGGGGATACCGTCGGCTAAACCCATCTTCCAGATCCTTGACAAAACTGTTCAATTGGGGTGCTCGAGTTAAGGCGAAAGCAAGAGCTATTTGTTCAGTAAACCAAGCTTTTCGTTCGGGTTATTCTCGTATAGGAAAAGACCTGGTAGTGGAATCGGATCATGCGCGGCGGCATGCGACAGT...

Protein

Download Protein FASTA

170 aa · TkA07G011640|TK1151|PROTEIN

MKKFRGFLIKHRVISLFRCIRRRTSPRGYRRLNPSSRSLTKLFNWGARVKAKARAICSVNQAFRSGYSRIGKDLVVESDHARRHATVPKGKMAVYVGQNDGGFERVLLPVIYINHPLFGQLLRKAEEEYGHEHPGGITIPCRFSEFESVKTRIAAGCGGRKMLPWKLSDA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G011640`
TK1151 ID	TkA07G011640
OH-1004 ID	LXL04_026854
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.200
Protein coverage (%)	TK1151 99.412 / OH-1004 65.759 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G011640

Location Chr07:3179648-3180707 (-)

Description Similar to SAUR36: Auxin-responsive protein SAUR36

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45210`	Acts a positive regulator of leaf senescence and may mediate auxin-induced leaf senescence.	SAUR36, a small auxin up RNA gene, is involved in the promotion of leaf senescence in Arabidopsis.2013 · DOI: 10.1104/pp.112.212787 Auxin and gibberellin responsive Arabidopsis SMALL AUXIN UP RNA36 regulates hypocotyl elongation in the light.2013 · DOI: 10.1007/s00299-013-1406-5
`At4g38850`	Functions as a positive effector of cell expansion through modulation of auxin transport.	No verified direct reference in this release
`At3g03820`	Functions as a positive effector of cell expansion through modulation of auxin transport (By similarity).	No verified direct reference in this release
`At2g46690`	May play a role in the apical hook development (Ref.7).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026854 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009266 response to temperature stimulus Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:1900057 positive regulation of leaf senescence Biological Process

GO:1900140 regulation of seedling development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G45210

ath:AT2G46690

ath:AT3G03820

ath:AT4G38850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.419

Rank 1 · TkA07G011640 · TK1151

Nucleus0.339

Rank 2 · TkA07G011640 · TK1151

Cytoplasm0.329

Rank 3 · TkA07G011640 · TK1151

Endoplasmic reticulum0.068

Rank 4 · TkA07G011640 · TK1151

Plastid0.046

Rank 5 · TkA07G011640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02519Auxin_inducible80-153 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G011640	`PF02519`	Auxin_inducible	80	153	1.3e-17	64.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22150`	Arabidopsis thaliana	sp\|O22150\|SAU36_ARATH Auxin-responsive protein SAUR36	45.300%	Swiss-Prot	Medium
`Q41220`	Arabidopsis thaliana	sp\|Q41220\|SAU15_ARATH Auxin-responsive protein SAUR15	53.400%	Swiss-Prot	Low
`Q9SRV9`	Arabidopsis thaliana	sp\|Q9SRV9\|SAU29_ARATH Auxin-responsive protein SAUR29	50.700%	Swiss-Prot	Low
`Q9ZUZ3`	Arabidopsis thaliana	sp\|Q9ZUZ3\|SAU32_ARATH Auxin-responsive protein SAUR32	50.700%	Swiss-Prot	Low

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