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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G006440
Reference: TK1151 Chr: Chr07 Coordinates: 1794852-1798195 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2128 bp · TkA07G006440|TK1151|cDNA

GTGGGTCCCATCGCCATGGAAGTGGACCCACATAGATGCAAGTCCATACGAGCAAGCCAAGAAGAAAAATGAGAAGAATAGTCGCAATTTTCCTCTATTGTCATCTACACTTCTATTCATCAATGGCCCTCACACTCTTTAACTTTGAGTCCACCCAAAGAGACGTGGATTCCATTGTTGGGCACTATTTCCCCTCCACACTCTGTAAATTTCATTCGTAATTGAATGAATTGAATGAATCTTGATCTGGGTTTTGGTCG...

CDS

Download CDS FASTA

543 bp · TkA07G006440|TK1151|CDS

ATGTATGGTACAACAATGAATTTGGTTACAACTGTTATAGGATTTGCAATGAGTGCCACTTTCATTGTATTCGTTTGTGCTAGACTCGTTTGTGGGCGTTTTCGTCGATATGAATCACGCGAATTGTTCGAGATTGAATCAAGGATTGACCTTGAAAGGCACGAACACCGGGTGGTAGGCCTCGAACCAGCCATGGTTGCAGCCATTCCTACAATGAAGTTTGACCGTGAAGCCTTCGGTTCCATGGATGATGCCCAGTG...

Protein

Download Protein FASTA

180 aa · TkA07G006440|TK1151|PROTEIN

MYGTTMNLVTTVIGFAMSATFIVFVCARLVCGRFRRYESRELFEIESRIDLERHEHRVVGLEPAMVAAIPTMKFDREAFGSMDDAQCTICLGEYQEKEVLRIMPKCGHSFHLSCIDMWLRKQSTCPVCRVSVITNSPEISREISLERSRQWLLPLHGQGSSQSQMDSAMGDVEATTEVRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G006440
TK1151 IDTkA07G006440
OH-1004 IDLXL04_026762
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G006440
LocationChr07:1794852-1798195 (+)
DescriptionSimilar to ATL52: RING-H2 finger protein ATL52
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g46160 RING-H2 finger protein ATL67. No verified direct reference in this release
At4g10160 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, and UBC34 in vitro. No verified direct reference in this release
At3g11110 RING-H2 finger protein ATL66. No verified direct reference in this release
At4g17905 Putative RING-H2 finger protein ATL53. No verified direct reference in this release
At2g47560 RING-H2 finger protein ATL64. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026762 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT3G03550
ath:AT4G10150
ath:AT4G10160
ath:AT4G17905
ath:AT5G17600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.312
Rank 1 · TkA07G006440 · TK1151
Cell membrane0.278
Rank 2 · TkA07G006440 · TK1151
Lysosome / Vacuole0.245
Rank 3 · TkA07G006440 · TK1151
Endoplasmic reticulum0.224
Rank 4 · TkA07G006440 · TK1151
Golgi apparatus0.200
Rank 5 · TkA07G006440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14447Prok-RING_419-31 aa
PF23412zf_RING_Vps820-26 aa
PF23413zf_RING_Vps8_fungal20-26 aa
PF22908PHD_NSD23-34 aa
PF14447Prok-RING_479-91 aa
PF13920zf-C3HC4_384-132 aa
PF17120zf-RING_1685-127 aa
PF22908PHD_NSD85-123 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G006440PF14447Prok-RING_419310.04814.3
TkA07G006440PF23412zf_RING_Vps820260.0116.4
TkA07G006440PF23413zf_RING_Vps8_fungal20260.1312.3
TkA07G006440PF22908PHD_NSD23340.02915.4
TkA07G006440PF14447Prok-RING_479910.04814.3
TkA07G006440PF13920zf-C3HC4_3841320.000122.7
TkA07G006440PF17120zf-RING_16851270.001718.6
TkA07G006440PF22908PHD_NSD851230.02915.4
TkA07G006440PF14446Prok-RING_1851150.03115.1
TkA07G006440PF05290Baculo_IE-1851360.03414.8
TkA07G006440PF23413zf_RING_Vps8_fungal85900.1312.3
TkA07G006440PF13639zf-RING_2861292.5e-1557.2
TkA07G006440PF12678zf-rbx1861292.3e-1144.5
TkA07G006440PF17123zf-RING_11861154.3e-1039.8
TkA07G006440PF13923zf-C3HC4_2861281.9e-0937.9
TkA07G006440PF14634zf-RING_5861295.4e-0627.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O82353Arabidopsis thalianasp|O82353|ATL67_ARATH RING-H2 finger protein ATL6745.700%Swiss-ProtLow
Q9SN27Arabidopsis thalianasp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL5945.300%Swiss-ProtLow
Q9SRM0Arabidopsis thalianasp|Q9SRM0|ATL66_ARATH RING-H2 finger protein ATL6639.000%Swiss-ProtLow
P0C041Arabidopsis thalianasp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL5340.900%Swiss-ProtLow
O22255Arabidopsis thalianasp|O22255|ATL64_ARATH RING-H2 finger protein ATL6437.000%Swiss-ProtMedium

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