TkA07G004840 | RubberDandelionOmics

Gene overview

TkA07G004840

Reference: TK1151 Chr: Chr07 Coordinates: 1324574-1329466 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2867 bp · TkA07G004840|TK1151|cDNA

ATTTTAACATGTTACACAATTCGTTGAGCCCACTTGTAAAATGGTCTAGTGATATTTTCAGACTTTCACCTTTAAAGTAATTTGTCTTTCCAAGACACTTTTCCTACCTATAATCTAAATAAGAAAAACTCAAAACCAACTTCAATCTCTCTTTTACACATCAATAACACTCATTCCTTGTACTTTCTCAATACCATGATCCTTCATTAATCTCCTAACACGTTTAACATCTTCCCATTTATTCATATCCGCATAAATAT...

CDS

Download CDS FASTA

1122 bp · TkA07G004840|TK1151|CDS

ATGGCTTTAATGGAGACGGCCGCGACTATGATGTTCACCGATTGTTCATCCCCGTCTTCTTCAACAGCTCGACTTCTTCACTTCACTAGCTGCAACGTTCAGAAGTTCCCCAACACTATTTATCATTCTCTCCGCTCAAATAACCTTCAGTTTGGCATATCAAACCCTAAATTTCCCAAAACCATCATCAGTCGCTGTTCATCGTCATCCCCCAGTGCTGTACAGGTGACTACCGAGGCATCTGCAACCATTATTGATGG...

Protein

Download Protein FASTA

373 aa · TkA07G004840|TK1151|PROTEIN

MALMETAATMMFTDCSSPSSSTARLLHFTSCNVQKFPNTIYHSLRSNNLQFGISNPKFPKTIISRCSSSSPSAVQVTTEASATIIDGKRVAKDIREEVAVEISRMKDSIGIVPGLAVILVGDRKDSATYVRNKKKACDSVGINSYEIRLPEDCTEEEVLNHISKFNDDPSVHGILVQLPLPSQMNEQNVLNAVCIEKDVDGFHPLNIGRLAMRGREPSFVPCTPKGCIELLHRYAIPIKGKRAVVIGRSNIVGMPAALLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G004840`
TK1151 ID	TkA07G004840
OH-1004 ID	LXL04_026740
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G004840

Location Chr07:1324574-1329466 (-)

Description Similar to FOLD4: Bifunctional protein FolD 4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00620`	Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.	No verified direct reference in this release
`At4g00600`	Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.	No verified direct reference in this release
`At2g38660`	Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.	No verified direct reference in this release
`At3g12290`	Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026740 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000105 L-histidine biosynthetic process Biological Process

GO:0006164 purine nucleotide biosynthetic process Biological Process

GO:0009086 methionine biosynthetic process Biological Process

GO:0009853 photorespiration Biological Process

GO:0035999 tetrahydrofolate interconversion Biological Process

GO:0046653 tetrahydrofolate metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004477 methenyltetrahydrofolate cyclohydrolase activity Molecular Function

GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity Molecular Function

KEGG gene cross-reference

ath:AT2G38660

ath:AT3G12290

ath:AT4G00600

ath:AT4G00620

cph:Cpha266_0997

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.942

Rank 1 · TkA07G004840 · TK1151

Mitochondrion0.094

Rank 2 · TkA07G004840 · TK1151

Cytoplasm0.027

Rank 3 · TkA07G004840 · TK1151

Nucleus0.022

Rank 4 · TkA07G004840 · TK1151

Peroxisome0.013

Rank 5 · TkA07G004840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00763THF_DHG_CYH85-200 aa

PF02882THF_DHG_CYH_C221-368 aa

PF01262AlaDh_PNT_C266-318 aa

PF02423OCD_Mu_crystall274-334 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G004840	`PF00763`	THF_DHG_CYH	85	200	6.4e-44	149.6
TkA07G004840	`PF02882`	THF_DHG_CYH_C	221	368	1.8e-62	209.9
TkA07G004840	`PF01262`	AlaDh_PNT_C	266	318	0.042	14.0
TkA07G004840	`PF02423`	OCD_Mu_crystall	274	334	0.0046	16.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65271`	Arabidopsis thaliana	sp\|O65271\|FOLD4_ARATH Bifunctional protein FolD 4, chloroplastic	73.600%	Swiss-Prot	High
`O65269`	Arabidopsis thaliana	sp\|O65269\|FOLD3_ARATH Bifunctional protein FolD 3, chloroplastic	62.800%	Swiss-Prot	High
`A2RVV7`	Arabidopsis thaliana	sp\|A2RVV7\|FOLD1_ARATH Bifunctional protein FolD 1, mitochondrial	64.500%	Swiss-Prot	High
`Q9LHH7`	Arabidopsis thaliana	sp\|Q9LHH7\|FOLD2_ARATH Bifunctional protein FolD 2	60.400%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card