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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G479620
Reference: TK1151 Chr: Chr06 Coordinates: 118845947-118847131 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1062 bp · TkA06G479620|TK1151|cDNA

TGGATTTATTTTATAAACTTGGTTTATAAAGTAATTCAAAACTTTTGTGAAGGAATTGAAGGGCTTACTAACTGCTGGGACCTTTCTTATAAGATTTTCTGTTCTTTTTTGAACAAATTTTTTTACAATTCTGGTCTTTGTTCAGTCTTTTATAAAGGAATTGAAGGGCTAACTGTTCATATTGTCATTAATGGACTTTTTGTCCTTTCCACCGGTTCAATCCTGGGAAGCCGAGTTGTTGGGTTTTATGCTTTTTTCCT...

CDS

Download CDS FASTA

1062 bp · TkA06G479620|TK1151|CDS

TGGATTTATTTTATAAACTTGGTTTATAAAGTAATTCAAAACTTTTGTGAAGGAATTGAAGGGCTTACTAACTGCTGGGACCTTTCTTATAAGATTTTCTGTTCTTTTTTGAACAAATTTTTTTACAATTCTGGTCTTTGTTCAGTCTTTTATAAAGGAATTGAAGGGCTAACTGTTCATATTGTCATTAATGGACTTTTTGTCCTTTCCACCGGTTCAATCCTGGGAAGCCGAGTTGTTGGGTTTTATGCTTTTTTCCT...

Protein

Download Protein FASTA

353 aa · TkA06G479620|TK1151|PROTEIN

WIYFINLVYKVIQNFCEGIEGLTNCWDLSYKIFCSFLNKFFYNSGLCSVFYKGIEGLTVHIVINGLFVLSTGSILGSRVVGFYAFFLKKQSGFDGCHNFFSYIFSVVSSVFIYSHTFDTACWHCIFCCTIYWHMHTDTAHFADHDPTGESARLVMRLTTPVGTGPDATGPYGASGRVLILREHIYHYGDERRDTRGLRGYGEQCVSRLFADFIFCAGDSLRCDFRDCYIFIEQRWCLMAVILLAADQYCHVFAYYWSVLM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G479620
TK1151 IDTkA06G479620
OH-1004 IDLXL04_022527
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)86.000
Protein coverage (%)TK1151 75.354 / OH-1004 21.681
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G479620
LocationChr06:118845947-118847131 (-)
DescriptionSimilar to VPS51: Vacuolar protein sorting-associated protein 51 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022527 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000727 double-strand break repair via break-induced replication Biological Process
GO:0006270 DNA replication initiation Biological Process
GO:0006271 DNA strand elongation involved in DNA replication Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006869 lipid transport Biological Process
GO:0006914 autophagy Biological Process
GO:0007030 Golgi organization Biological Process
GO:0007034 vacuolar transport Biological Process
GO:0007041 lysosomal transport Biological Process
GO:0009555 pollen development Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
KEGG gene cross-reference
ath:AT4G02030
ath:AT4G02060
dme:Dmel_CG15087
dosa:Os12g0560700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.358
Rank 1 · TkA06G479620 · TK1151
Nucleus0.202
Rank 2 · TkA06G479620 · TK1151
Extracellular0.192
Rank 3 · TkA06G479620 · TK1151
Mitochondrion0.146
Rank 4 · TkA06G479620 · TK1151
Cell membrane0.085
Rank 5 · TkA06G479620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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