TkA06G479560 | RubberDandelionOmics

Gene overview

TkA06G479560

Reference: TK1151 Chr: Chr06 Coordinates: 118821973-118824140 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2087 bp · TkA06G479560|TK1151|cDNA

TTTCGCCCAACAATCTCATTTCTTACTTTTTGTAGTATTAAATAATATCTTAGATTTTGAAAGAAGCATTAGAAAATGGAAGAATAATGACCCGCCGGAACAAAAAAAAATGGTCGAGGTGTGTGCTTTTTTGGCAATATTAGACGGTCGACACCATTATCTCTGCTGCTTGCTCTTCATTTCACTCTCCTCCTTTACCGACCTCAGCTTCCCTCACTACCATCGCCTTTCTCACCGCCTTGCACCCGTCTCACCGCCTT...

CDS

Download CDS FASTA

435 bp · TkA06G479560|TK1151|CDS

ATGAGAGTAGGATTTATCACCACCAAAGCTGTGGCGGTGGTACTGGTGTTAGTGGTGGTGGCTCAAACGGTGGAATCAGCAATAGGGGTGAACTGGGGTACAATCTCCAACCACCGGTTGGCACCTTCCACGGTGGTGGATCTTCTCAGAGACAACAAGATTCAAAAGGTGAAACTTTTCGATGCTGACCCAGATTGTCTCCGAGCTCTGATGGGCACCGGAATCGAGGTCATGATGGGCGTCTCAAATGATCTATTGGC...

Protein

Download Protein FASTA

144 aa · TkA06G479560|TK1151|PROTEIN

MRVGFITTKAVAVVLVLVVVAQTVESAIGVNWGTISNHRLAPSTVVDLLRDNKIQKVKLFDADPDCLRALMGTGIEVMMGVSNDLLATLSSSTAAADLWVSQNVSTYMVRGGANINCNCSVCRPTDLTDYNWDLAESEFVEGGD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G479560`
TK1151 ID	TkA06G479560
OH-1004 ID	LXL04_022530
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G479560

Location Chr06:118821973-118824140 (+)

Description Similar to At4g31140: Glucan endo-1,3-beta-glucosidase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58090`	Glucan endo-1,3-beta-glucosidase 6.	No verified direct reference in this release
`At4g31140`	Glucan endo-1,3-beta-glucosidase 5.	No verified direct reference in this release
`At1g64760`	Glucan endo-1,3-beta-glucosidase 8.	No verified direct reference in this release
`At5g42100`	Plasmodesmal-associated membrane beta-1,3-glucanase involved in plasmodesmal callose degradation and functions in the gating of plasmodesmata.	No verified direct reference in this release
`At1g32860`	Glucan endo-1,3-beta-glucosidase 11.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022530 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0007154 cell communication Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G64760

ath:AT4G31140

ath:AT5G42100

ath:AT5G58090

ath:AT5G58480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.371

Rank 1 · TkA06G479560 · TK1151

Lysosome / Vacuole0.244

Rank 2 · TkA06G479560 · TK1151

Endoplasmic reticulum0.134

Rank 3 · TkA06G479560 · TK1151

Cytoplasm0.102

Rank 4 · TkA06G479560 · TK1151

Cell membrane0.076

Rank 5 · TkA06G479560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00332Glyco_hydro_1728-108 aa

PF25047Beta-prop_TEP1_2nd40-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G479560	`PF00332`	Glyco_hydro_17	28	108	1.4e-13	51.9
TkA06G479560	`PF25047`	Beta-prop_TEP1_2nd	40	105	0.038	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Z08`	Arabidopsis thaliana	sp\|Q93Z08\|E136_ARATH Glucan endo-1,3-beta-glucosidase 6	48.400%	Swiss-Prot	Medium
`Q9M088`	Arabidopsis thaliana	sp\|Q9M088\|E135_ARATH Glucan endo-1,3-beta-glucosidase 5	60.200%	Swiss-Prot	Medium
`Q6NKW9`	Arabidopsis thaliana	sp\|Q6NKW9\|E138_ARATH Glucan endo-1,3-beta-glucosidase 8	51.100%	Swiss-Prot	Medium
`Q9FHX5`	Arabidopsis thaliana	sp\|Q9FHX5\|E1310_ARATH Glucan endo-1,3-beta-glucosidase 10	40.000%	Swiss-Prot	Medium
`Q8L868`	Arabidopsis thaliana	sp\|Q8L868\|E1311_ARATH Glucan endo-1,3-beta-glucosidase 11	34.300%	Swiss-Prot	Medium

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