RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G462860
Reference: TK1151 Chr: Chr06 Coordinates: 114568991-114569308 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

318 bp · TkA06G462860|TK1151|cDNA

ATGTTTAACCCACTCAATTACAATCCCGTTTCATTCGTGTCGATTCGTGAATTCCTTGTCGTCACAAACTTCAAGGACATCAGTCAGAGGAAAGATTTGCTGGTAACAACTTGTGCAGTCTGCTTGAGCGAATTTGAAGGTGATGACAAGATTAGATGCTTGAAAAACTGTACGCGTATTTTCCATAAGGGTTGTTTGGATCGTTGGATGGATTATGACCAAGACACTTGCCCGATGTGTCGAACTCCAATTTTTCCATA...

CDS

Download CDS FASTA

318 bp · TkA06G462860|TK1151|CDS

ATGTTTAACCCACTCAATTACAATCCCGTTTCATTCGTGTCGATTCGTGAATTCCTTGTCGTCACAAACTTCAAGGACATCAGTCAGAGGAAAGATTTGCTGGTAACAACTTGTGCAGTCTGCTTGAGCGAATTTGAAGGTGATGACAAGATTAGATGCTTGAAAAACTGTACGCGTATTTTCCATAAGGGTTGTTTGGATCGTTGGATGGATTATGACCAAGACACTTGCCCGATGTGTCGAACTCCAATTTTTCCATA...

Protein

Download Protein FASTA

105 aa · TkA06G462860|TK1151|PROTEIN

MFNPLNYNPVSFVSIREFLVVTNFKDISQRKDLLVTTCAVCLSEFEGDDKIRCLKNCTRIFHKGCLDRWMDYDQDTCPMCRTPIFPYAVEMNTINDSRLLLMRSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G462860
TK1151 IDTkA06G462860
OH-1004 IDLXL04_022709
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)66.300
Protein coverage (%)TK1151 83.810 / OH-1004 55.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G462860
LocationChr06:114568991-114569308 (+)
DescriptionSimilar to BRH1: Brassinosteroid-responsive RING protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61460 May be involved in the brassinosteroids (BRs) signaling pathway and regulate the growth and development of rosette leaves.
Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana.2002 · DOI: 10.1007/s00425-001-0723-z
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.2018 · DOI: 10.1007/s11427-017-9133-8
At2g04240 Function on abscisic acid homeostasis at post-translational level, probably through ubiquitin/proteasome-dependent substrate- specific degradation.
Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis.2006 · DOI: 10.1111/j.1365-313x.2006.02782.x
Global analysis of della direct targets in early gibberellin signaling in Arabidopsis.2007 · DOI: 10.1105/tpc.107.054999
At4g30400 RING-H2 finger protein ATL13. No verified direct reference in this release
At5g43420 RING-H2 finger protein ATL16. No verified direct reference in this release
At2g01150 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid (ABA) signaling and responses to salt and osmotic stresses during seed germination and early seedling development.
The Arabidopsis RING finger E3 ligase RHA2b acts additively with RHA2a in regulating abscisic acid signaling and drought response.2011 · DOI: 10.1104/pp.111.176214

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022709 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009741 response to brassinosteroid Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:1901371 regulation of leaf morphogenesis Biological Process
GO:1905421 regulation of plant organ morphogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23980
ath:AT3G61460
ath:AT4G09100
ath:AT4G11360
ath:AT4G11370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.514
Rank 1 · TkA06G462860 · TK1151
Nucleus0.474
Rank 2 · TkA06G462860 · TK1151
Mitochondrion0.063
Rank 3 · TkA06G462860 · TK1151
Cell membrane0.058
Rank 4 · TkA06G462860 · TK1151
Endoplasmic reticulum0.051
Rank 5 · TkA06G462860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13832zf-HC5HC2H_224-67 aa
PF13771zf-HC5HC2H32-67 aa
PF01363FYVE32-73 aa
PF06677Auto_anti-p2733-41 aa
PF00130C1_135-68 aa
PF17120zf-RING_1636-79 aa
PF14446Prok-RING_136-68 aa
PF13639zf-RING_237-81 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G462860PF13832zf-HC5HC2H_224670.0116.7
TkA06G462860PF13771zf-HC5HC2H32670.04414.7
TkA06G462860PF01363FYVE32731.210.0
TkA06G462860PF06677Auto_anti-p2733410.2412.3
TkA06G462860PF00130C1_135680.0314.9
TkA06G462860PF17120zf-RING_1636790.002318.2
TkA06G462860PF14446Prok-RING_136680.1113.4
TkA06G462860PF13639zf-RING_237811.3e-1145.2
TkA06G462860PF12861zf-ANAPC1137822.2e-0628.3
TkA06G462860PF27108PHD_Pygo37660.0007320.3
TkA06G462860PF13920zf-C3HC4_337840.003217.9
TkA06G462860PF22908PHD_NSD37780.02615.5
TkA06G462860PF21202SLX1_C37810.08413.9
TkA06G462860PF04641Rtf237830.1612.0
TkA06G462860PF23555zf-RING_Vps4137700.5910.5
TkA06G462860PF25998U-box_ZFPL137870.611.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XF92Arabidopsis thalianasp|Q9XF92|BRH1_ARATH Brassinosteroid-responsive RING protein 153.000%Swiss-ProtHigh
Q9SI09Arabidopsis thalianasp|Q9SI09|XERIC_ARATH Probable E3 ubiquitin-protein ligase XERICO47.500%Swiss-ProtMedium
Q940Q4Arabidopsis thalianasp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL1340.300%Swiss-ProtMedium
Q9LSW9Arabidopsis thalianasp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL1644.700%Swiss-ProtLow
Q9ZU51Arabidopsis thalianasp|Q9ZU51|RHA2B_ARATH E3 ubiquitin-protein ligase RHA2B37.500%Swiss-ProtMedium

JBrowse

View in Genome Browser