TkA06G419210 | RubberDandelionOmics

Gene overview

TkA06G419210

Reference: TK1151 Chr: Chr06 Coordinates: 103775582-103776916 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1305 bp · TkA06G419210|TK1151|cDNA

ATGATAAGCAACTTGGTACGATTTAGCAGAAGGCAGCTTCACACAATCATCTCAAGGGAAATCATTAAACCTTCTTCCCCAACCCCTTCCCACCTCAAAACTTACAATCTTTCAGTACTTGATCAAATCATGCTCAACACATTTATGCCCATGGTTACCTTCTACCCAAACACCAATCATAGTTCGCATGATAAAACCCTGGATCTGAAGAACTCATTATCTCGAGCATTAACAAAGTACTACCCTTTTGCTGGTACGCT...

CDS

Download CDS FASTA

1305 bp · TkA06G419210|TK1151|CDS

ATGATAAGCAACTTGGTACGATTTAGCAGAAGGCAGCTTCACACAATCATCTCAAGGGAAATCATTAAACCTTCTTCCCCAACCCCTTCCCACCTCAAAACTTACAATCTTTCAGTACTTGATCAAATCATGCTCAACACATTTATGCCCATGGTTACCTTCTACCCAAACACCAATCATAGTTCGCATGATAAAACCCTGGATCTGAAGAACTCATTATCTCGAGCATTAACAAAGTACTACCCTTTTGCTGGTACGCT...

Protein

Download Protein FASTA

434 aa · TkA06G419210|TK1151|PROTEIN

MISNLVRFSRRQLHTIISREIIKPSSPTPSHLKTYNLSVLDQIMLNTFMPMVTFYPNTNHSSHDKTLDLKNSLSRALTKYYPFAGTLDKVTPTYVDCNDNGADFLEASIDSKLSDFLTKSKHEDLDQLFPHGLVDYRSKHKVNPLAVQVNHFECGGVAVAVSLSHKIADAASLAHFVNDWAEMTRFCSRELKRNDDPQFIPFQSMNMNSKEMSFERPDDCITRSFVLPKLKIDELKLKVKTMTAESAEPIMNPSRVDVLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G419210`
TK1151 ID	TkA06G419210
OH-1004 ID	LXL04_022995
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	92.700
Protein coverage (%)	TK1151 88.940 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G419210`
Location	Chr06:103775582-103776916 (+)
Description	Similar to ASAT3: Acylsugar acyltransferase 3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_022995` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009821 alkaloid biosynthetic process Biological Process GO:0035835 indole alkaloid biosynthetic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0016407 acetyltransferase activity Molecular Function GO:0016746 acyltransferase activity Molecular Function
KEGG gene cross-reference	ag:AGT56097 ag:UQZ09626 ag:UQZ09635 ag:URS65387 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.802

Rank 1 · TkA06G419210 · TK1151

Nucleus0.321

Rank 2 · TkA06G419210 · TK1151

Endoplasmic reticulum0.062

Rank 3 · TkA06G419210 · TK1151

Cell membrane0.043

Rank 4 · TkA06G419210 · TK1151

Mitochondrion0.041

Rank 5 · TkA06G419210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02458Transferase15-430 aa

PF18166pP_pnuc_296-142 aa

PF18166pP_pnuc_2293-340 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G419210	`PF02458`	Transferase	15	430	4.9e-78	263.4
TkA06G419210	`PF18166`	pP_pnuc_2	96	142	0.098	13.5
TkA06G419210	`PF18166`	pP_pnuc_2	293	340	0.098	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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