TkA06G373920 | RubberDandelionOmics

Gene overview

TkA06G373920

Reference: TK1151 Chr: Chr06 Coordinates: 92569214-92571291 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1450 bp · TkA06G373920|TK1151|cDNA

TTTTAATTTTCGATGCCTTTATCAATCAAGACTTTTGAAGTTAGTTGGACAGTTAGGGTTTCGATAGTCGATGAACTACACTAACAATCTCTGGTCTGGAAAATGAAGAACATCGTGAAATCCGGCGAAGAAGATGCAGATGCTTCTTCCTCCTTCAGTCGTTTACCAGACGAACTTATCCTCCAAATTATAAACAGATTAATCGATTTGAAAACTCTATGCTTTTGCTATCTGGTTTCCAAACGTTTCTCCTCCATTGT...

CDS

Download CDS FASTA

1080 bp · TkA06G373920|TK1151|CDS

ATGAAGAACATCGTGAAATCCGGCGAAGAAGATGCAGATGCTTCTTCCTCCTTCAGTCGTTTACCAGACGAACTTATCCTCCAAATTATAAACAGATTAATCGATTTGAAAACTCTATGCTTTTGCTATCTGGTTTCCAAACGTTTCTCCTCCATTGTACTTCACGTCGATGCCGTCTCCTTCACTGCTCCGCTGTTGAACTCTCCCACCTCCGATGATAACACATTCGGCGATGTCGACGGCGGAGGATTGCCCAGAAA...

Protein

Download Protein FASTA

359 aa · TkA06G373920|TK1151|PROTEIN

MKNIVKSGEEDADASSSFSRLPDELILQIINRLIDLKTLCFCYLVSKRFSSIVLHVDAVSFTAPLLNSPTSDDNTFGDVDGGGLPRKFFRLLINGVVFKPISLLRRMIVTQSKPLPPIISSFYGQSFRSAVTFLSKFKGVKSLTVELPSSSHKGIDSSCLFKWKVRFGSRIESFFFLSPDSISETDEFDVNEIGDEEDINISNDLFRQKVHNAFQCLKDVILRHRMLLYIAKDLPMLEEVYITDSGRRGRLSISGAKLAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G373920`
TK1151 ID	TkA06G373920
OH-1004 ID	LXL04_023246
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.200
Protein coverage (%)	TK1151 99.721 / OH-1004 69.380 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G373920

Location Chr06:92569214-92571291 (+)

Description Similar to At1g22220: F-box protein At1g22220

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22220`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g78100`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	AUXIN UP-REGULATED F-BOX PROTEIN1 regulates the cross talk between auxin transport and cytokinin signaling during plant root growth.2011 · DOI: 10.1104/pp.111.179812

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023246 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0010286 heat acclimation Biological Process

GO:0010540 basipetal auxin transport Biological Process

GO:0010541 acropetal auxin transport Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G22220

ath:AT1G30200

ath:AT1G78100

ath:AT4G18380

ath:AT5G46170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.600

Rank 1 · TkA06G373920 · TK1151

Cytoplasm0.276

Rank 2 · TkA06G373920 · TK1151

Cell membrane0.152

Rank 3 · TkA06G373920 · TK1151

Endoplasmic reticulum0.110

Rank 4 · TkA06G373920 · TK1151

Mitochondrion0.039

Rank 5 · TkA06G373920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like18-54 aa

PF00646F-box18-55 aa

PF29466F-box_COS11118-53 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G373920	`PF12937`	F-box-like	18	54	1.5e-06	28.5
TkA06G373920	`PF00646`	F-box	18	55	0.0051	17.4
TkA06G373920	`PF29466`	F-box_COS111	18	53	0.015	16.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LM18`	Arabidopsis thaliana	sp\|Q9LM18\|AUF2_ARATH F-box protein AUF2	26.300%	Swiss-Prot	Low
`Q9C9S2`	Arabidopsis thaliana	sp\|Q9C9S2\|AUF1_ARATH F-box protein AUF1	24.600%	Swiss-Prot	Low

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