TkA06G370000 | RubberDandelionOmics

Gene overview

TkA06G370000

Reference: TK1151 Chr: Chr06 Coordinates: 91624389-91627350 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2255 bp · TkA06G370000|TK1151|cDNA

ATCAAGAGCCGTGATGATTAGGGATTCCGATTGTGCGAACAATCGATCAACAACGAATATAAATCGATATCGCCCTCTTCAAACATCAAATCCAAAAGCATCGTTGCAAATTTCCTTCAGGTGATTCACGCCATCAAAACTGAATTTCATCTTTCTGTTAATCATTTCTTTTTTCCCTTTGCTTCAATCGTAAGCAATTTATATTATTCGTGGATCATATTGCCAGATGTATGTCATATTGAATGTGTGGTATATGCTAT...

CDS

Download CDS FASTA

1311 bp · TkA06G370000|TK1151|CDS

ATGGCTGACGCTCACGACACCGACAAAAACATCGAGATATGGAAGATCAAGAAACTCATAAAGGCACTAGAAGCCGCACGTGGCAACGGAACAAGCATGATTTCCCTCATCATGCCACCACGCGACCAAGTATCTCGCGTCACTAAAATGCTCGGAGACGAATTCGGAACCGCTTCCAATATAAAAAGCCGAGTAAACCGTCAGTCAGTTTTAGGCGCAATCACCTCCGCCCAACAACGCCTCAAACTCTACAACAAAGT...

Protein

Download Protein FASTA

436 aa · TkA06G370000|TK1151|PROTEIN

MADAHDTDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRAINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRELLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPSTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVCDVSYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G370000`
TK1151 ID	TkA06G370000
OH-1004 ID	LXL04_023305
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 97.477 / OH-1004 87.629 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G370000

Location Chr06:91624389-91627350 (-)

Description Similar to ERF1-3: Eukaryotic peptide chain release factor subunit 1-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26618`	Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.	No verified direct reference in this release
`At1g12920`	Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.	No verified direct reference in this release
`At5g47880`	Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.	Translation termination in Arabidopsis thaliana: characterisation of three versions of release factor 1.2004 · DOI: 10.1016/j.gene.2004.06.053 Cosuppression of eukaryotic release factor 1-1 in Arabidopsis affects cell elongation and radial cell division.2005 · DOI: 10.1104/pp.105.062695

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023305 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002184 cytoplasmic translational termination Biological Process

GO:0006415 translational termination Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009536 plastid Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0018444 translation release factor complex Cellular Component

GO:0003747 translation release factor activity Molecular Function

GO:0016149 translation release factor activity, codon specific Molecular Function

GO:1990825 sequence-specific mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G12920

ath:AT3G26618

ath:AT5G47880

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.723

Rank 1 · TkA06G370000 · TK1151

Nucleus0.369

Rank 2 · TkA06G370000 · TK1151

Endoplasmic reticulum0.051

Rank 3 · TkA06G370000 · TK1151

Mitochondrion0.032

Rank 4 · TkA06G370000 · TK1151

Cell membrane0.030

Rank 5 · TkA06G370000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03463eRF1_112-140 aa

PF18854baeRF_family10132-253 aa

PF03464eRF1_2144-277 aa

PF18859acVLRF1154-245 aa

PF03465eRF1_3281-418 aa

PF01248Ribosomal_L7Ae296-333 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G370000	`PF03463`	eRF1_1	12	140	1.4e-54	184.3
TkA06G370000	`PF18854`	baeRF_family10	132	253	0.00014	22.8
TkA06G370000	`PF03464`	eRF1_2	144	277	9.2e-42	143.2
TkA06G370000	`PF18859`	acVLRF1	154	245	0.00013	22.9
TkA06G370000	`PF03465`	eRF1_3	281	418	2.1e-32	112.5
TkA06G370000	`PF01248`	Ribosomal_L7Ae	296	333	0.14	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P35614`	Arabidopsis thaliana	sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3	88.800%	Swiss-Prot	High
`Q9LPV8`	Arabidopsis thaliana	sp\|Q9LPV8\|ERF1Y_ARATH Eukaryotic peptide chain release factor subunit 1-2	88.000%	Swiss-Prot	High
`Q39097`	Arabidopsis thaliana	sp\|Q39097\|ERF1X_ARATH Eukaryotic peptide chain release factor subunit 1-1	87.200%	Swiss-Prot	High

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