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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G346830
Reference: TK1151 Chr: Chr06 Coordinates: 86138074-86139952 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1419 bp · TkA06G346830|TK1151|cDNA

ATGGTAGTATTTGATGATATTTGGGATTATAGTCACTGGCAGGATTTAAGAAAATATTTTCCAGATGACAGAAATGGAAGTAGGATCCTGCTAACCACCCGCAACATAGACCCGTATTCAGAGTCAACAAGTACAACTGTGCATAGGATGAGACTACGGACAGCCCGTGAAAGCTGGCGTATATTACAAACGATGGTTTTTAAAAATGGCAAATGTCCTTGGAGATTATATGATATTGGAAAGCAGATCTCCAGAAAATG...

CDS

Download CDS FASTA

1419 bp · TkA06G346830|TK1151|CDS

ATGGTAGTATTTGATGATATTTGGGATTATAGTCACTGGCAGGATTTAAGAAAATATTTTCCAGATGACAGAAATGGAAGTAGGATCCTGCTAACCACCCGCAACATAGACCCGTATTCAGAGTCAACAAGTACAACTGTGCATAGGATGAGACTACGGACAGCCCGTGAAAGCTGGCGTATATTACAAACGATGGTTTTTAAAAATGGCAAATGTCCTTGGAGATTATATGATATTGGAAAGCAGATCTCCAGAAAATG...

Protein

Download Protein FASTA

472 aa · TkA06G346830|TK1151|PROTEIN

MVVFDDIWDYSHWQDLRKYFPDDRNGSRILLTTRNIDPYSESTSTTVHRMRLRTARESWRILQTMVFKNGKCPWRLYDIGKQISRKCCGLPLAVSITAGLLRGTWRRASWKEVAESLSSYIVNDPNQYMDTLALSYNHLPPHLRQCYLYLGAFPGDCDIPVHKLILLWVAQGFVDQSTSKTLEDVAQSYLMDLLGRSLVMVSKKGADGQLVNLRYLAIQADDGNPPASISNLVHLQILIILSRRNIFVPKSTWDIECLRH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G346830
TK1151 IDTkA06G346830
OH-1004 IDLXL04_023388
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)74.800
Protein coverage (%)TK1151 100.000 / OH-1004 62.264
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G346830
LocationChr06:86138074-86139952 (-)
DescriptionSimilar to R1A-6: Putative late blight resistance protein homolog R1A-6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023388 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009626 plant-type hypersensitive response Biological Process
GO:0051607 defense response to virus Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.398
Rank 1 · TkA06G346830 · TK1151
Nucleus0.312
Rank 2 · TkA06G346830 · TK1151
Cell membrane0.299
Rank 3 · TkA06G346830 · TK1151
Endoplasmic reticulum0.068
Rank 4 · TkA06G346830 · TK1151
Plastid0.057
Rank 5 · TkA06G346830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00931NB-ARC1-69 aa
PF17784Sulfotransfer_46-87 aa
PF00560LRR_1131-141 aa
PF23559WHD_DRP153-206 aa
PF00931NB-ARC199-259 aa
PF23598LRR_14208-326 aa
PF12799LRR_4209-232 aa
PF25019LRR_R13L1-DRL21212-264 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G346830PF00931NB-ARC1691.1e-1248.6
TkA06G346830PF17784Sulfotransfer_46870.1212.9
TkA06G346830PF00560LRR_11311419.67.6
TkA06G346830PF23559WHD_DRP1532062.7e-1350.5
TkA06G346830PF00931NB-ARC1992591.1e-1248.6
TkA06G346830PF23598LRR_142083266.3e-1555.5
TkA06G346830PF12799LRR_42092320.007617.2
TkA06G346830PF25019LRR_R13L1-DRL212122640.01216.2
TkA06G346830PF00560LRR_12232329.67.6
TkA06G346830PF12799LRR_42292400.007617.2
TkA06G346830PF12799LRR_42572740.007617.2
TkA06G346830PF12799LRR_42582860.007617.2
TkA06G346830PF00560LRR_12582639.67.6
TkA06G346830PF25013LRR_Zer-12773080.03614.9
TkA06G346830PF25013LRR_Zer-12923850.03614.9
TkA06G346830PF25019LRR_R13L1-DRL212953540.01216.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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