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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G334620
Reference: TK1151 Chr: Chr06 Coordinates: 83292932-83293621 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

526 bp · TkA06G334620|TK1151|cDNA

CATGATCCAACAGCCATGAGAACAAAAGTGAGATGATTATATGACATTGCAAATGTCTTTTCATCCATGAATCTCCTTGAGAAGATGCGTCACCCTGAGAGTGGAAAACCATCATTCAGATGGTTGGGATTGAAAGGACACCCGAACAGTGAATGTATAACACTGGATACAAACAGCTCAAAAAGGCGAGCTTTTGGGACACACATTACAAACAATGATAATAACGAGGAATCAAAAAGATACCGAATGTCTGAATGGAG...

CDS

Download CDS FASTA

426 bp · TkA06G334620|TK1151|CDS

ATGAATCTCCTTGAGAAGATGCGTCACCCTGAGAGTGGAAAACCATCATTCAGATGGTTGGGATTGAAAGGACACCCGAACAGTGAATGTATAACACTGGATACAAACAGCTCAAAAAGGCGAGCTTTTGGGACACACATTACAAACAATGATAATAACGAGGAATCAAAAAGATACCGAATGTCTGAATGGAGCTCAAAAGAAGTGATTGTAGCAATTCATGGGAATGTTGACATTGTGAAGGTAGAATGTGATGAGAA...

Protein

Download Protein FASTA

141 aa · TkA06G334620|TK1151|PROTEIN

MNLLEKMRHPESGKPSFRWLGLKGHPNSECITLDTNSSKRRAFGTHITNNDNNEESKRYRMSEWSSKEVIVAIHGNVDIVKVECDENLPPPPPPQRNSKEFVFGPFRPVGASGSKKLKPGEDWENLTDTYRPQHDNKGMFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G334620
TK1151 IDTkA06G334620
OH-1004 IDLXL04_039659
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.900
Protein coverage (%)TK1151 99.291 / OH-1004 25.135
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G334620
LocationChr06:83292932-83293621 (+)
DescriptionSimilar to E2FF: E2F transcription factor-like E2FF
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039659 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0007004 telomere maintenance via telomerase Biological Process
GO:0008284 positive regulation of cell population proliferation Biological Process
GO:0009733 response to auxin Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0032466 negative regulation of cytokinesis Biological Process
GO:0032876 negative regulation of DNA endoreduplication Biological Process
KEGG gene cross-reference
ath:AT3G01330
ath:AT3G48160
ath:AT5G14960
dre:565952
hsa:80119
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.769
Rank 1 · TkA06G334620 · TK1151
Cytoplasm0.277
Rank 2 · TkA06G334620 · TK1151
Cell membrane0.044
Rank 3 · TkA06G334620 · TK1151
Mitochondrion0.044
Rank 4 · TkA06G334620 · TK1151
Endoplasmic reticulum0.028
Rank 5 · TkA06G334620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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